Publications

2018

  • Lactobacillus kosoi sp. nov., a fructophilic species isolated from kôso, a Japanese sugar-vegetable fermented beverage.
    Chiou TY, Suda W, Oshima K, Hattori M, Matsuzaki C, Yamamoto K, Takahashi T
    Antonie Van Leeuwenhoek (2018 Jul) 111:7
  • Ectomycorrhizal fungal communities in alpine relict forests of Pinus pumila on Mt. Norikura, Japan.
    Koizumi T, Hattori M, Nara K
    Mycorrhiza (2018 Feb) 28:2
  • Enterotypes in the landscape of gut microbial community composition.
    Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P
    Nat Microbiol (2018 Jan) 3:1
  • Efficacy of Indigo Naturalis in a Multicenter Randomized Controlled Trial of Patients With Ulcerative Colitis.
    Naganuma M, Sugimoto S, Mitsuyama K, Kobayashi T, Yoshimura N, Ohi H, Tanaka S, Andoh A, Ohmiya N, Saigusa K, Yamamoto T, Morohoshi Y, Ichikawa H, Matsuoka K, Hisamatsu T, Watanabe K, Mizuno S, Suda W, Hattori M, Fukuda S, Hirayama A, Abe T, Watanabe M, Hibi T, Suzuki Y, Kanai T, INDIGO Study Group.
    Gastroenterology (2018 Mar) 154:4
  • β-Glucans in food modify colonic microflora by inducing antimicrobial protein, calprotectin, in a Dectin-1-induced-IL-17F-dependent manner.
    Kamiya T, Tang C, Kadoki M, Oshima K, Hattori M, Saijo S, Adachi Y, Ohno N, Iwakura Y
    Mucosal Immunol (2018 May) 11:3
    PubMed ID: 29068000 DOI: 10.1038/mi.2017.86

2017

  • DNA hypermethyation and silencing of <i>PITX1</i> correlated with advanced stage and poor postoperative prognosis of esophageal squamous cell carcinoma.
    Otsubo T, Yamada K, Hagiwara T, Oshima K, Iida K, Nishikata K, Toyoda T, Igari T, Nohara K, Yamashita S, Hattori M, Dohi T, Kawamura YI
    Oncotarget (2017 Oct 13) 8:48
  • Commensal Lactobacillus Controls Immune Tolerance during Acute Liver Injury in Mice.
    Nakamoto N, Amiya T, Aoki R, Taniki N, Koda Y, Miyamoto K, Teratani T, Suzuki T, Chiba S, Chu PS, Hayashi A, Yamaguchi A, Shiba S, Miyake R, Katayama T, Suda W, Mikami Y, Kamada N, Ebinuma H, Saito H, Hattori M, Kanai T
    Cell Rep (2017 Oct 31) 21:5
  • Comprehensive single-cell transcriptome analysis reveals heterogeneity in endometrioid adenocarcinoma tissues.
    Hashimoto S, Tabuchi Y, Yurino H, Hirohashi Y, Deshimaru S, Asano T, Mariya T, Oshima K, Takamura Y, Ukita Y, Ametani A, Kondo N, Monma N, Takeda T, Misu S, Okayama T, Ikeo K, Saito T, Kaneko S, Suzuki Y, Hattori M, Matsushima K, Torigoe T
    Sci Rep (2017 Oct 27) 7:1
  • Ectopic colonization of oral bacteria in the intestine drives T<sub>H</sub>1 cell induction and inflammation.
    Atarashi K, Suda W, Luo C, Kawaguchi T, Motoo I, Narushima S, Kiguchi Y, Yasuma K, Watanabe E, Tanoue T, Thaiss CA, Sato M, Toyooka K, Said HS, Yamagami H, Rice SA, Gevers D, Johnson RC, Segre JA, Chen K, Kolls JK, Elinav E, Morita H, Xavier RJ, Hattori M, Honda K
    Science (2017 Oct 20) 358:6361
  • Towards standards for human fecal sample processing in metagenomic studies.
    Costea PI, Zeller G, Sunagawa S, Pelletier E, Alberti A, Levenez F, Tramontano M, Driessen M, Hercog R, Jung FE, Kultima JR, Hayward MR, Coelho LP, Allen-Vercoe E, Bertrand L, Blaut M, Brown JRM, Carton T, Cools-Portier S, Daigneault M, Derrien M, Druesne A, de Vos WM, Finlay BB, Flint HJ, Guarner F, Hattori M, Heilig H, Luna RA, van Hylckama Vlieg J, Junick J, Klymiuk I, Langella P, Le Chatelier E, Mai V, Manichanh C, Martin JC, Mery C, Morita H, O'Toole PW, Orvain C, Patil KR, Penders J, Persson S, Pons N, Popova M, Salonen A, Saulnier D, Scott KP, Singh B, Slezak K, Veiga P, Versalovic J, Zhao L, Zoetendal EG, Ehrlich SD, Dore J, Bork P
    Nat Biotechnol (2017 Nov) 35:11
    PubMed ID: 28967887 DOI: 10.1038/nbt.3960
  • Microbiome profile of the amniotic fluid as a predictive biomarker of perinatal outcome.
    Urushiyama D, Suda W, Ohnishi E, Araki R, Kiyoshima C, Kurakazu M, Sanui A, Yotsumoto F, Murata M, Nabeshima K, Yasunaga S, Saito S, Nomiyama M, Hattori M, Miyamoto S, Hata K
    Sci Rep (2017 Sep 22) 7:1
  • Small genome symbiont underlies cuticle hardness in beetles.
    Anbutsu H, Moriyama M, Nikoh N, Hosokawa T, Futahashi R, Tanahashi M, Meng XY, Kuriwada T, Mori N, Oshima K, Hattori M, Fujie M, Satoh N, Maeda T, Shigenobu S, Koga R, Fukatsu T
    Proc Natl Acad Sci U S A (2017 Oct 3) 114:40
  • Genomic structure and evolution of the mating type locus in the green seaweed Ulva partita.
    Yamazaki T, Ichihara K, Suzuki R, Oshima K, Miyamura S, Kuwano K, Toyoda A, Suzuki Y, Sugano S, Hattori M, Kawano S
    Sci Rep (2017 Sep 15) 7:1
  • Gallbladder-derived surfactant protein D regulates gut commensal bacteria for maintaining intestinal homeostasis.
    Sarashina-Kida H, Negishi H, Nishio J, Suda W, Nakajima Y, Yasui-Kato M, Iwaisako K, Kang S, Endo N, Yanai H, Asagiri M, Kida H, Hattori M, Kumanogoh A, Taniguchi T
    Proc Natl Acad Sci U S A (2017 Sep 19) 114:38
  • Aging-related changes in the diversity of women's skin microbiomes associated with oral bacteria.
    Shibagaki N, Suda W, Clavaud C, Bastien P, Takayasu L, Iioka E, Kurokawa R, Yamashita N, Hattori Y, Shindo C, Breton L, Hattori M
    Sci Rep (2017 Sep 5) 7:1
  • Intestinal Dysbiosis and Biotin Deprivation Induce Alopecia through Overgrowth of Lactobacillus murinus in Mice.
    Hayashi A, Mikami Y, Miyamoto K, Kamada N, Sato T, Mizuno S, Naganuma M, Teratani T, Aoki R, Fukuda S, Suda W, Hattori M, Amagai M, Ohyama M, Kanai T
    Cell Rep (2017 Aug 15) 20:7
  • A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes.
    Takayasu L, Suda W, Watanabe E, Fukuda S, Takanashi K, Ohno H, Takayasu M, Takayasu H, Hattori M
    PLoS One (2017) 12:8
  • Clinical impact of pre-transplant gut microbial diversity on outcomes of allogeneic hematopoietic stem cell transplantation.
    Doki N, Suyama M, Sasajima S, Ota J, Igarashi A, Mimura I, Morita H, Fujioka Y, Sugiyama D, Nishikawa H, Shimazu Y, Suda W, Takeshita K, Atarashi K, Hattori M, Sato E, Watakabe-Inamoto K, Yoshioka K, Najima Y, Kobayashi T, Kakihana K, Takahashi N, Sakamaki H, Honda K, Ohashi K
    Ann Hematol (2017 Sep) 96:9
  • Root-associated fungal communities in three Pyroleae species and their mycobiont sharing with surrounding trees in subalpine coniferous forests on Mount Fuji, Japan.
    Jia S, Nakano T, Hattori M, Nara K
    Mycorrhiza (2017 Nov) 27:8
  • Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed.
    Tanaka M, Endo S, Kotake F, Al-Saari N, Amin AKMR, Feng G, Mino S, Doi H, Ogura Y, Hayashi T, Suda W, Hattori M, Yumoto I, Sawabe T, Sawabe T, Araki T
    PLoS One (2017) 12:6
  • Bifidobacterium-Rich Fecal Donor May Be a Positive Predictor for Successful Fecal Microbiota Transplantation in Patients with Irritable Bowel Syndrome.
    Mizuno S, Masaoka T, Naganuma M, Kishimoto T, Kitazawa M, Kurokawa S, Nakashima M, Takeshita K, Suda W, Mimura M, Hattori M, Kanai T
    Digestion (2017) 96:1
    PubMed ID: 28628918 DOI: 10.1159/000471919
  • Circadian oscillations of microbial and functional composition in the human salivary microbiome.
    Takayasu L, Suda W, Takanashi K, Iioka E, Kurokawa R, Shindo C, Hattori Y, Yamashita N, Nishijima S, Oshima K, Hattori M
    DNA Res (2017 Jun 1) 24:3
  • Dysbiosis and compositional alterations with aging in the gut microbiota of patients with heart failure.
    Kamo T, Akazawa H, Suda W, Saga-Kamo A, Shimizu Y, Yagi H, Liu Q, Nomura S, Naito AT, Takeda N, Harada M, Toko H, Kumagai H, Ikeda Y, Takimoto E, Suzuki JI, Honda K, Morita H, Hattori M, Komuro I
    PLoS One (2017) 12:3
  • A proliferative probiotic Bifidobacterium strain in the gut ameliorates progression of metabolic disorders via microbiota modulation and acetate elevation.
    Aoki R, Kamikado K, Suda W, Takii H, Mikami Y, Suganuma N, Hattori M, Koga Y
    Sci Rep (2017 Mar 2) 7:
    PubMed ID: 28252037 DOI: 10.1038/srep43522
  • Single fecal microbiota transplantation failed to change intestinal microbiota and had limited effectiveness against ulcerative colitis in Japanese patients.
    Mizuno S, Nanki K, Matsuoka K, Saigusa K, Ono K, Arai M, Sugimoto S, Kiyohara H, Nakashima M, Takeshita K, Naganuma M, Suda W, Hattori M, Kanai T
    Intest Res (2017 Jan) 15:1
  • Draft Genome Sequencing of the Highly Halotolerant and Allopolyploid Yeast <i>Zygosaccharomyces rouxii</i> NBRC 1876.
    Sato A, Matsushima K, Oshima K, Hattori M, Koyama Y
    Genome Announc (2017 Feb 16) 5:7
  • Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands.
    Nakagome S, Chinen H, Iraha A, Hokama A, Takeyama Y, Sakisaka S, Matsui T, Kidd JR, Kidd KK, Said HS, Suda W, Morita H, Hattori M, Hanihara T, Kimura R, Ishida H, Fujita J, Kinjo F, Mano S, Oota H
    Hum Genet (2017 Apr) 136:4
  • Changes in the bacterial community in the fermentation process of kôso, a Japanese sugar-vegetable fermented beverage.
    Chiou TY, Suda W, Oshima K, Hattori M, Takahashi T
    Biosci Biotechnol Biochem (2017 Feb) 81:2
  • Uremic Toxin-Producing Gut Microbiota in Rats with Chronic Kidney Disease.
    Kikuchi M, Ueno M, Itoh Y, Suda W, Hattori M
    Nephron (2017) 135:1
    PubMed ID: 27701177 DOI: 10.1159/000450619
  • Characterisation of the faecal microbiota in Japanese patients with paediatric-onset primary sclerosing cholangitis.
    Iwasawa K, Suda W, Tsunoda T, Oikawa-Kawamoto M, Umetsu S, Inui A, Fujisawa T, Morita H, Sogo T, Hattori M
    Gut (2017 Jul) 66:7

2016

  • Draft Genome Sequence of Magnetovibrio blakemorei Strain MV-1, a Marine Vibrioid Magnetotactic Bacterium.
    Trubitsyn D, Abreu F, Ward FB, Taylor T, Hattori M, Kondo S, Trivedi U, Staniland S, Lins U, Bazylinski DA
    Genome Announc (2016 Nov 23) 4:6
  • Nitrogen fixation and nifH diversity in human gut microbiota.
    Igai K, Itakura M, Nishijima S, Tsurumaru H, Suda W, Tsutaya T, Tomitsuka E, Tadokoro K, Baba J, Odani S, Natsuhara K, Morita A, Yoneda M, Greenhill AR, Horwood PF, Inoue J, Ohkuma M, Hongoh Y, Yamamoto T, Siba PM, Hattori M, Minamisawa K, Umezaki M
    Sci Rep (2016 Aug 24) 6:
    PubMed ID: 27554344 DOI: 10.1038/srep31942
  • A Histone Methyltransferase ESET Is Critical for T Cell Development.
    Takikita S, Muro R, Takai T, Otsubo T, Kawamura YI, Dohi T, Oda H, Kitajima M, Oshima K, Hattori M, Endo TA, Toyoda T, Weis J, Shinkai Y, Suzuki H
    J Immunol (2016 Sep 15) 197:6
  • Fecal microbiota transplantation for patients with steroid-resistant acute graft-versus-host disease of the gut.
    Kakihana K, Fujioka Y, Suda W, Najima Y, Kuwata G, Sasajima S, Mimura I, Morita H, Sugiyama D, Nishikawa H, Hattori M, Hino Y, Ikegawa S, Yamamoto K, Toya T, Doki N, Koizumi K, Honda K, Ohashi K
    Blood (2016 Oct 20) 128:16
  • Ecophysiological consequences of alcoholism on human gut microbiota: implications for ethanol-related pathogenesis of colon cancer.
    Tsuruya A, Kuwahara A, Saito Y, Yamaguchi H, Tsubo T, Suga S, Inai M, Aoki Y, Takahashi S, Tsutsumi E, Suwa Y, Morita H, Kinoshita K, Totsuka Y, Suda W, Oshima K, Hattori M, Mizukami T, Yokoyama A, Shimoyama T, Nakayama T
    Sci Rep (2016 Jun 13) 6:
    PubMed ID: 27295340 DOI: 10.1038/srep27923
  • Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan.
    Gao F, Al-Saari N, Rohul Amin AK, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T
    Syst Appl Microbiol (2016 Jul) 39:5
  • Deciphering the relationship among phosphate dynamics, electron-dense body and lipid accumulation in the green alga Parachlorella kessleri.
    Ota S, Yoshihara M, Yamazaki T, Takeshita T, Hirata A, Konomi M, Oshima K, Hattori M, Bišová K, Zachleder V, Kawano S
    Sci Rep (2016 May 16) 6:
    PubMed ID: 27180903 DOI: 10.1038/srep25731
  • Two FOXP3(+)CD4(+) T cell subpopulations distinctly control the prognosis of colorectal cancers.
    Saito T, Nishikawa H, Wada H, Nagano Y, Sugiyama D, Atarashi K, Maeda Y, Hamaguchi M, Ohkura N, Sato E, Nagase H, Nishimura J, Yamamoto H, Takiguchi S, Tanoue T, Suda W, Morita H, Hattori M, Honda K, Mori M, Doki Y, Sakaguchi S
    Nat Med (2016 Jun) 22:6
    PubMed ID: 27111280 DOI: 10.1038/nm.4086
  • Draft Genome Sequence of Leuconostoc mesenteroides 213M0, Isolated from Traditional Fermented Mare Milk Airag in Bulgan Aimag, Mongolia.
    Morita H, Toh H, Oshima K, Nakano A, Hano C, Yoshida S, Bolormaa T, Burenjargal S, Nguyen CT, Tashiro K, Arakawa K, Miyamoto T
    Genome Announc (2016 Mar 31) 4:2
  • Draft Genome Sequence of Leuconostoc mesenteroides 406 Isolated from the Traditional Fermented Mare Milk Airag in Tuv Aimag, Mongolia.
    Morita H, Toh H, Oshima K, Nakano A, Hano C, Yoshida S, Nguyen TT, Wulijideligen, Tashiro K, Arakawa K, Miyamoto T
    Genome Announc (2016 Mar 24) 4:2
  • The gut microbiome of healthy Japanese and its microbial and functional uniqueness.
    Nishijima S, Suda W, Oshima K, Kim SW, Hirose Y, Morita H, Hattori M
    DNA Res (2016 Apr) 23:2
  • Individual Apostichopus japonicus fecal microbiome reveals a link with polyhydroxybutyrate producers in host growth gaps.
    Yamazaki Y, Meirelles PM, Mino S, Suda W, Oshima K, Hattori M, Thompson FL, Sakai Y, Sawabe T, Sawabe T
    Sci Rep (2016 Feb 24) 6:
    PubMed ID: 26905381 DOI: 10.1038/srep21631
  • Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure.
    Ota S, Oshima K, Yamazaki T, Kim S, Yu Z, Yoshihara M, Takeda K, Takeshita T, Hirata A, Bišová K, Zachleder V, Hattori M, Kawano S
    Biotechnol Biofuels (2016) 9:
  • Unique pioneer microbial communities exposed to volcanic sulfur dioxide.
    Fujimura R, Kim SW, Sato Y, Oshima K, Hattori M, Kamijo T, Ohta H
    Sci Rep (2016 Jan 21) 6:
    PubMed ID: 26791101 DOI: 10.1038/srep19687
  • Draft Genome Sequence of Streptococcus orisasini SH06, Isolated from a Healthy Thoroughbred Gastrointestinal Tract.
    Takagi M, Nakano A, Toh H, Oshima K, Arakawa K, Nakajima F, Tashiro K, Kikusui T, Yanagida F, Morita H
    Genome Announc (2016 Jan 14) 4:1
  • Draft Genome Sequence of Lactobacillus farciminis NBRC 111452, Isolated from Kôso, a Japanese Sugar-Vegetable Fermented Beverage.
    Chiou TY, Oshima K, Suda W, Hattori M, Takahashi T
    Genome Announc (2016 Jan 14) 4:1
  • Genomic and metagenomic analysis of microbes in a soil environment affected by the 2011 Great East Japan Earthquake tsunami.
    Hiraoka S, Machiyama A, Ijichi M, Inoue K, Oshima K, Hattori M, Yoshizawa S, Kogure K, Iwasaki W
    BMC Genomics (2016 Jan 14) 17:
  • Major Anaerobic Bacteria Responsible for the Production of Carcinogenic Acetaldehyde from Ethanol in the Colon and Rectum.
    Tsuruya A, Kuwahara A, Saito Y, Yamaguchi H, Tenma N, Inai M, Takahashi S, Tsutsumi E, Suwa Y, Totsuka Y, Suda W, Oshima K, Hattori M, Mizukami T, Yokoyama A, Shimoyama T, Nakayama T
    Alcohol Alcohol (2016 Jul) 51:4
  • Polymicrobial Amniotic Fluid Infection with Mycoplasma/Ureaplasma and Other Bacteria Induces Severe Intra-Amniotic Inflammation Associated with Poor Perinatal Prognosis in Preterm Labor.
    Yoneda N, Yoneda S, Niimi H, Ueno T, Hayashi S, Ito M, Shiozaki A, Urushiyama D, Hata K, Suda W, Hattori M, Kigawa M, Kitajima I, Saito S
    Am J Reprod Immunol (2016 Feb) 75:2
    PubMed ID: 26668114 DOI: 10.1111/aji.12456
  • Interferon-γ constrains cytokine production of group 2 innate lymphoid cells.
    Kudo F, Ikutani M, Seki Y, Otsubo T, Kawamura YI, Dohi T, Oshima K, Hattori M, Nakae S, Takatsu K, Takaki S
    Immunology (2016 Jan) 147:1
    PubMed ID: 26425820 DOI: 10.1111/imm.12537
  • First microbiota assessments of children's paddling pool waters evaluated using 16S rRNA gene-based metagenome analysis.
    Sawabe T, Suda W, Ohshima K, Hattori M, Sawabe T
    J Infect Public Health (2016 May-Jun) 9:3

2015

  • Draft Genome Sequence of Bifidobacterium aesculapii DSM 26737T, Isolated from Feces of Baby Common Marmoset.
    Toh H, Yamazaki Y, Tashiro K, Kawarai S, Oshima K, Nakano A, Kim CN, Mimura I, Arakawa K, Iriki A, Kikusui T, Morita H
    Genome Announc (2015 Dec 10) 3:6
  • Dissecting the taxonomic heterogeneity within Propionibacterium acnes: proposal for Propionibacterium acnes subsp. acnes subsp. nov. and Propionibacterium acnes subsp. elongatum subsp. nov.
    Dekio I, Culak R, Misra R, Gaulton T, Fang M, Sakamoto M, Ohkuma M, Oshima K, Hattori M, Klenk HP, Rajendram D, Gharbia SE, Shah HN
    Int J Syst Evol Microbiol (2015 Dec) 65:12
  • Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance.
    Kato H, Mori H, Maruyama F, Toyoda A, Oshima K, Endo R, Fuchu G, Miyakoshi M, Dozono A, Ohtsubo Y, Nagata Y, Hattori M, Fujiyama A, Kurokawa K, Tsuda M
    DNA Res (2015 Dec) 22:6
  • Th17 Cell Induction by Adhesion of Microbes to Intestinal Epithelial Cells.
    Atarashi K, Tanoue T, Ando M, Kamada N, Nagano Y, Narushima S, Suda W, Imaoka A, Setoyama H, Nagamori T, Ishikawa E, Shima T, Hara T, Kado S, Jinnohara T, Ohno H, Kondo T, Toyooka K, Watanabe E, Yokoyama S, Tokoro S, Mori H, Noguchi Y, Morita H, Ivanov II, Sugiyama T, Nuñez G, Camp JG, Hattori M, Umesaki Y, Honda K
    Cell (2015 Oct 8) 163:2
  • CTRP6 is an endogenous complement regulator that can effectively treat induced arthritis.
    Murayama MA, Kakuta S, Inoue A, Umeda N, Yonezawa T, Maruhashi T, Tateishi K, Ishigame H, Yabe R, Ikeda S, Seno A, Chi HH, Hashiguchi Y, Kurata R, Tada T, Kubo S, Sato N, Liu Y, Hattori M, Saijo S, Matsushita M, Fujita T, Sumida T, Iwakura Y
    Nat Commun (2015 Sep 25) 6:
    PubMed ID: 26404464 DOI: 10.1038/ncomms9483
  • Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters.
    Miyake S, Kim S, Suda W, Oshima K, Nakamura M, Matsuoka T, Chihara N, Tomita A, Sato W, Kim SW, Morita H, Hattori M, Yamamura T
    PLoS One (2015) 10:9
  • Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae.
    Al-Saari N, Gao F, Rohul AA, Sato K, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Meirelles PM, Thompson FL, Thompson C, Filho GM, Gomez-Gil B, Sawabe T, Sawabe T
    PLoS One (2015) 10:8
  • Inhibition of Dectin-1 Signaling Ameliorates Colitis by Inducing Lactobacillus-Mediated Regulatory T Cell Expansion in the Intestine.
    Tang C, Kamiya T, Liu Y, Kadoki M, Kakuta S, Oshima K, Hattori M, Takeshita K, Kanai T, Saijo S, Ohno N, Iwakura Y
    Cell Host Microbe (2015 Aug 12) 18:2
  • Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium.
    Kato H, Ogawa N, Ohtsubo Y, Oshima K, Toyoda A, Mori H, Nagata Y, Kurokawa K, Hattori M, Fujiyama A, Tsuda M
    Genome Announc (2015 Jul 16) 3:4
  • Draft Genome Sequence of Streptomyces incarnatus NRRL8089, which Produces the Nucleoside Antibiotic Sinefungin.
    Oshima K, Hattori M, Shimizu H, Fukuda K, Nemoto M, Inagaki K, Tamura T
    Genome Announc (2015 Jul 9) 3:4
  • Complete genome sequence of Bifidobacterium breve JCM 1192(T) isolated from infant feces.
    Morita H, Toh H, Oshima K, Nakano A, Omori E, Hattori Y, Arakawa K, Suda W, Honda K, Hattori M
    J Biotechnol (2015 Sep 20) 210:
  • Complete genome sequence of Bifidobacterium angulatum JCM 7096(T) isolated from human feces.
    Morita H, Toh H, Oshima K, Nakano A, Kiuchi M, Kuroyanagi H, Arakawa K, Suda W, Honda K, Hattori M
    J Biotechnol (2015 Oct 10) 211:
  • Complete genome sequence of Bifidobacterium bifidum JCM 1255(T) isolated from feces of a breast-fed infant.
    Morita H, Toh H, Oshima K, Nakano A, Shindo C, Komiya K, Arakawa K, Suda W, Honda K, Hattori M
    J Biotechnol (2015 Sep 20) 210:
  • Complete genome sequence of Bifidobacterium pseudocatenulatum JCM 1200(T) isolated from infant feces.
    Morita H, Toh H, Oshima K, Nakano A, Arakawa K, Takayama Y, Kurokawa R, Takanashi K, Honda K, Hattori M
    J Biotechnol (2015 Sep 20) 210:
  • Complete genome sequence of Bifidobacterium catenulatum JCM 1194(T) isolated from human feces.
    Morita H, Toh H, Oshima K, Nakano A, Yamashita N, Iioka E, Arakawa K, Suda W, Honda K, Hattori M
    J Biotechnol (2015 Sep 20) 210:
  • Influence of Proton-Pump Inhibitors on the Luminal Microbiota in the Gastrointestinal Tract.
    Tsuda A, Suda W, Morita H, Takanashi K, Takagi A, Koga Y, Hattori M
    Clin Transl Gastroenterol (2015 Jun 11) 6:
    PubMed ID: 26065717 DOI: 10.1038/ctg.2015.20
  • Complete Genome Sequence of Parascardovia denticolens JCM 12538T, Isolated from Human Dental Caries.
    Oshima K, Hayashi J, Toh H, Nakano A, Shindo C, Komiya K, Morita H, Honda K, Hattori M
    Genome Announc (2015 May 14) 3:3
  • Complete Genome Sequence of Scardovia inopinata JCM 12537T, Isolated from Human Dental Caries.
    Oshima K, Hayashi J, Toh H, Nakano A, Omori E, Hattori Y, Morita H, Honda K, Hattori M
    Genome Announc (2015 May 14) 3:3
  • Complete Genome Sequence of Cyanobacterium Geminocystis sp. Strain NIES-3708, Which Performs Type II Complementary Chromatic Acclimation.
    Hirose Y, Katayama M, Ohtsubo Y, Misawa N, Iioka E, Suda W, Oshima K, Hanaoka M, Tanaka K, Eki T, Ikeuchi M, Kikuchi Y, Ishida M, Hattori M
    Genome Announc (2015 May 7) 3:3
  • Mutual reinforcement of inflammation and carcinogenesis by the Helicobacter pylori CagA oncoprotein.
    Suzuki N, Murata-Kamiya N, Yanagiya K, Suda W, Hattori M, Kanda H, Bingo A, Fujii Y, Maeda S, Koike K, Hatakeyama M
    Sci Rep (2015 May 6) 5:
    PubMed ID: 25944120 DOI: 10.1038/srep10024
  • Complete Genome Sequence of Cyanobacterium Geminocystis sp. Strain NIES-3709, Which Harbors a Phycoerythrin-Rich Phycobilisome.
    Hirose Y, Katayama M, Ohtsubo Y, Misawa N, Iioka E, Suda W, Oshima K, Hanaoka M, Tanaka K, Eki T, Ikeuchi M, Kikuchi Y, Ishida M, Hattori M
    Genome Announc (2015 Apr 30) 3:2
  • Complete Genome Sequence of Bifidobacterium kashiwanohense JCM 15439T, Isolated from Feces from a Healthy Japanese Infant.
    Morita H, Toh H, Nakano A, Oshima K, Takagi M, Suda W, Tanabe S, Hattori M
    Genome Announc (2015 Apr 16) 3:2
  • Complete Genome Sequence of Gardnerella vaginalis Strain JCM 11026T, Isolated from Vaginal Tracts of Women.
    Oshima K, Hisamatsu S, Toh H, Nakano A, Kiuchi M, Kuroyanagi H, Morita H, Hattori M
    Genome Announc (2015 Apr 9) 3:2
  • Complete Genome Sequence of Bifidobacterium scardovii Strain JCM 12489T, Isolated from Human Blood.
    Toh H, Oshima K, Nakano A, Yamashita N, Iioka E, Kurokawa R, Morita H, Hattori M
    Genome Announc (2015 Apr 9) 3:2
  • Complete Genome Sequence of Bifidobacterium dentium Strain JCM 1195T, Isolated from Human Dental Caries.
    Toh H, Hayashi J, Oshima K, Nakano A, Takayama Y, Takanashi K, Morita H, Hattori M
    Genome Announc (2015 Apr 9) 3:2
  • Tepidicaulis marinus gen. nov., sp. nov., a marine bacterium that reduces nitrate to nitrous oxide under strictly microaerobic conditions.
    Takeuchi M, Yamagishi T, Kamagata Y, Oshima K, Hattori M, Katayama T, Hanada S, Tamaki H, Marumo K, Maeda H, Nedachi M, Iwasaki W, Suwa Y, Sakata S
    Int J Syst Evol Microbiol (2015 Jun) 65:Pt 6
    PubMed ID: 25740933 DOI: 10.1099/ijs.0.000167
  • Distribution and evolution of nitrogen fixation genes in the phylum Bacteroidetes.
    Inoue J, Oshima K, Suda W, Sakamoto M, Iino T, Noda S, Hongoh Y, Hattori M, Ohkuma M
    Microbes Environ (2015) 30:1
  • Genome analysis of a novel Bradyrhizobium sp. DOA9 carrying a symbiotic plasmid.
    Okazaki S, Noisangiam R, Okubo T, Kaneko T, Oshima K, Hattori M, Teamtisong K, Songwattana P, Tittabutr P, Boonkerd N, Saeki K, Sato S, Uchiumi T, Minamisawa K, Teaumroong N
    PLoS One (2015) 10:2
  • Strong effect of climate on ectomycorrhizal fungal composition: evidence from range overlap between two mountains.
    Miyamoto Y, Sakai A, Hattori M, Nara K
    ISME J (2015 Aug) 9:8
    PubMed ID: 25647348 DOI: 10.1038/ismej.2015.8
  • Complete nucleotide sequence of the IncN plasmid encoding IMP-6 and CTX-M-2 from emerging carbapenem-resistant Enterobacteriaceae in Japan.
    Kayama S, Shigemoto N, Kuwahara R, Oshima K, Hirakawa H, Hisatsune J, Jové T, Nishio H, Yamasaki K, Wada Y, Ueshimo T, Miura T, Sueda T, Onodera M, Yokozaki M, Hattori M, Ohge H, Sugai M
    Antimicrob Agents Chemother (2015 Feb) 59:2
    PubMed ID: 25487806 DOI: 10.1128/AAC.04759-14
  • Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark.
    Hiraide Y, Oshima K, Fujisawa T, Uesaka K, Hirose Y, Tsujimoto R, Yamamoto H, Okamoto S, Nakamura Y, Terauchi K, Omata T, Ihara K, Hattori M, Fujita Y
    Plant Cell Physiol (2015 Feb) 56:2
    PubMed ID: 25416288 DOI: 10.1093/pcp/pcu165

2014

  • Draft Genome Sequence of the Betaproteobacterial Endosymbiont Associated with the Fungus Mortierella elongata FMR23-6.
    Fujimura R, Nishimura A, Ohshima S, Sato Y, Nishizawa T, Oshima K, Hattori M, Narisawa K, Ohta H
    Genome Announc (2014 Dec 11) 2:6
  • Draft Genome Sequence of Marine Flavobacterium Jejuia pallidilutea Strain 11shimoA1 and Pigmentation Mutants.
    Takatani N, Nakanishi M, Meirelles P, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T
    Genome Announc (2014 Dec 4) 2:6
  • Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4.
    Takatani N, Nakanishi M, Meirelles P, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T
    Genome Announc (2014 Nov 13) 2:6
  • Draft Genome Sequences of Marine Flavobacterium Nonlabens Strains NR17, NR24, NR27, NR32, NR33, and Ara13.
    Nakanishi M, Meirelles P, Suzuki R, Takatani N, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T
    Genome Announc (2014 Nov 13) 2:6
  • Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota.
    Al-Saari N, Meirelles PM, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Thompson FL, Gomez-Gil B, Sawabe T, Sawabe T
    Genome Announc (2014 Oct 30) 2:5
  • Phylogeny and functions of bacterial communities associated with field-grown rice shoots.
    Okubo T, Ikeda S, Sasaki K, Ohshima K, Hattori M, Sato T, Minamisawa K
    Microbes Environ (2014 Sep 17) 29:3
    PubMed ID: 25130883
  • Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen.
    Iguchi A, Nagaya Y, Pradel E, Ooka T, Ogura Y, Katsura K, Kurokawa K, Oshima K, Hattori M, Parkhill J, Sebaihia M, Coulthurst SJ, Gotoh N, Thomson NR, Ewbank JJ, Hayashi T
    Genome Biol Evol (2014 Aug) 6:8
    PubMed ID: 25070509 DOI: 10.1093/gbe/evu160
  • Foxp3(+) T cells regulate immunoglobulin a selection and facilitate diversification of bacterial species responsible for immune homeostasis.
    Kawamoto S, Maruya M, Kato LM, Suda W, Atarashi K, Doi Y, Tsutsui Y, Qin H, Honda K, Okada T, Hattori M, Fagarasan S
    Immunity (2014 Jul 17) 41:1
  • Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum.
    Takeuchi M, Kamagata Y, Oshima K, Hanada S, Tamaki H, Marumo K, Maeda H, Nedachi M, Hattori M, Iwasaki W, Sakata S
    Int J Syst Evol Microbiol (2014 Sep) 64:Pt 9
  • Evolutionary origin of insect-Wolbachia nutritional mutualism.
    Nikoh N, Hosokawa T, Moriyama M, Oshima K, Hattori M, Fukatsu T
    Proc Natl Acad Sci U S A (2014 Jul 15) 111:28
  • Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod.
    Kudo T, Kawauchi A, Nakahara T, Zhang X, Taniyama S, Takatani T, Arakawa O, Oshima K, Suda W, Kitamura K, Iida T, Iino T, Inoue T, Hongoh Y, Hattori M, Ohkuma M
    Genome Announc (2014 Jun 19) 2:3
  • Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples.
    Kudo T, Nakahara T, Zhang X, Taniyama S, Arakawa O, Murase S, Nakata H, Oshima K, Suda W, Kitamura K, Iida T, Oshida Y, Inoue T, Hongoh Y, Hattori M, Ohkuma M
    Genome Announc (2014 Jun 19) 2:3
  • Complete Genome Sequence of Winogradskyella sp. Strain PG-2, a Proteorhodopsin-Containing Marine Flavobacterium.
    Kumagai Y, Yoshizawa S, Oshima K, Hattori M, Iwasaki W, Kogure K
    Genome Announc (2014 May 29) 2:3
  • Draft Genome Sequences of Marinobacter similis A3d10T and Marinobacter salarius R9SW1T.
    Ivanova EP, Ng HJ, Webb HK, Feng G, Oshima K, Hattori M, Ohkuma M, Sergeev AF, Mikhailov VV, Crawford RJ, Sawabe T
    Genome Announc (2014 May 22) 2:3
  • Multiple omics uncovers host-gut microbial mutualism during prebiotic fructooligosaccharide supplementation.
    Kato T, Fukuda S, Fujiwara A, Suda W, Hattori M, Kikuchi J, Ohno H
    DNA Res (2014 Oct) 21:5
  • Draft Genome Sequence of Lactobacillus sucicola JCM 15457T, a Motile Lactic Acid Bacterium Isolated from Oak Sap.
    Irisawa T, Oshima K, Suda W, Kitahara M, Sakamoto M, Kitamura K, Iida T, Hattori M, Ohkuma M
    Genome Announc (2014 May 8) 2:3
  • Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis.
    International Glossina Genome Initiative.
    Science (2014 Apr 25) 344:6182
  • Draft Genome Sequences of Psychrobacter Strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, Isolated Preferentially from Frozen Aquatic Organisms.
    Kudo T, Kidera A, Kida M, Kawauchi A, Shimizu R, Nakahara T, Zhang X, Yamada A, Amano M, Hamada Y, Taniyama S, Arakawa O, Yoshida A, Oshima K, Suda W, Kuwahara H, Nogi Y, Kitamura K, Yuki M, Iida T, Moriya S, Inoue T, Hongoh Y, Hattori M, Ohkuma M
    Genome Announc (2014 Apr 3) 2:2
  • Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shōchū Residue.
    Yuki M, Oshima K, Suda W, Kitahara M, Kitamura K, Iida T, Hattori M, Ohkuma M
    Genome Announc (2014 Mar 27) 2:2
  • Draft Genome Sequence of Cytophaga fermentans JCM 21142T, a Facultative Anaerobe Isolated from Marine Mud.
    Starns D, Oshima K, Suda W, Iino T, Yuki M, Inoue J, Kitamura K, Iida T, Darby A, Hattori M, Ohkuma M
    Genome Announc (2014 Mar 27) 2:2
  • Draft Genome Sequences of Cyclodextrin-Producing Alkaliphilic Bacillus Strains JCM 19045, JCM 19046, and JCM 19047.
    Kudo T, Sakamoto K, Akinaga M, Kawauchi A, Nakahara T, Zhang X, Yamada A, Oshima K, Suda W, Kuwahara H, Nakamura N, Nogi Y, Kitamura K, Yuki M, Iida T, Moriya S, Inoue T, Hongoh Y, Hattori M, Ohkuma M
    Genome Announc (2014 Mar 20) 2:2
  • Draft Genome Sequence of Paenibacillus pini JCM 16418T, Isolated from the Rhizosphere of Pine Tree.
    Yuki M, Oshima K, Suda W, Oshida Y, Kitamura K, Iida T, Hattori M, Ohkuma M
    Genome Announc (2014 Mar 20) 2:2
  • Characterization of the 17 strains of regulatory T cell-inducing human-derived Clostridia.
    Narushima S, Sugiura Y, Oshima K, Atarashi K, Hattori M, Suematsu M, Honda K
    Gut Microbes (2014 May-Jun) 5:3
    PubMed ID: 24642476 DOI: 10.4161/gmic.28572
  • The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan.
    Miyamoto Y, Nakano T, Hattori M, Nara K
    ISME J (2014 Aug) 8:8
  • Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community.
    Yuki M, Oshima K, Suda W, Sakamoto M, Kitamura K, Iida T, Hattori M, Ohkuma M
    Genome Announc (2014 Feb 20) 2:1
  • Draft Genome Sequence of the Boron-Tolerant and Moderately Halotolerant Bacterium Gracilibacillus boraciitolerans JCM 21714T.
    Ahmed I, Oshima K, Suda W, Kitamura K, Iida T, Ohmori Y, Fujiwara T, Hattori M, Ohkuma M
    Genome Announc (2014 Feb 20) 2:1
  • Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite.
    Yuki M, Oshima K, Suda W, Sakamoto M, Iida T, Hattori M, Ohkuma M
    Genome Announc (2014 Feb 13) 2:1
  • Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T.
    Yuki M, Oshima K, Suda W, Oshida Y, Kitamura K, Iida T, Hattori M, Ohkuma M
    Genome Announc (2014 Jan 30) 2:1
  • Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine.
    Sakamoto M, Oshima K, Suda W, Kitamura K, Iida T, Hattori M, Ohkuma M
    Genome Announc (2014 Jan 30) 2:1
  • Characterization of early microbial communities on volcanic deposits along a vegetation gradient on the island of Miyake, Japan.
    Guo Y, Fujimura R, Sato Y, Suda W, Kim SW, Oshima K, Hattori M, Kamijo T, Narisawa K, Ohta H
    Microbes Environ (2014) 29:1
    PubMed ID: 24463576
  • Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite.
    Ohkuma M, Yuki M, Oshima K, Suda W, Oshida Y, Kitamura K, Iida T, Hattori M
    Genome Announc (2014 Jan 23) 2:1
  • CTRP3 plays an important role in the development of collagen-induced arthritis in mice.
    Murayama MA, Kakuta S, Maruhashi T, Shimizu K, Seno A, Kubo S, Sato N, Saijo S, Hattori M, Iwakura Y
    Biochem Biophys Res Commun (2014 Jan 3) 443:1
  • Methyloceanibacter caenitepidi gen. nov., sp. nov., a facultatively methylotrophic bacterium isolated from marine sediments near a hydrothermal vent.
    Takeuchi M, Katayama T, Yamagishi T, Hanada S, Tamaki H, Kamagata Y, Oshima K, Hattori M, Marumo K, Nedachi M, Maeda H, Suwa Y, Sakata S
    Int J Syst Evol Microbiol (2014 Feb) 64:Pt 2
  • Dysbiosis of salivary microbiota in inflammatory bowel disease and its association with oral immunological biomarkers.
    Said HS, Suda W, Nakagome S, Chinen H, Oshima K, Kim S, Kimura R, Iraha A, Ishida H, Fujita J, Mano S, Morita H, Dohi T, Oota H, Hattori M
    DNA Res (2014 Feb) 21:1

2013

  • Genomic adaptation of the Lactobacillus casei group.
    Toh H, Oshima K, Nakano A, Takahata M, Murakami M, Takaki T, Nishiyama H, Igimi S, Hattori M, Morita H
    PLoS One (2013) 8:10
  • Emergence of Staphylococcus aureus carrying multiple drug resistance genes on a plasmid encoding exfoliative toxin B.
    Hisatsune J, Hirakawa H, Yamaguchi T, Fudaba Y, Oshima K, Hattori M, Kato F, Kayama S, Sugai M
    Antimicrob Agents Chemother (2013 Dec) 57:12
    PubMed ID: 24080652 DOI: 10.1128/AAC.01062-13
  • Complete Genome Sequence of the Equol-Producing Bacterium Adlercreutzia equolifaciens DSM 19450T.
    Toh H, Oshima K, Suzuki T, Hattori M, Morita H
    Genome Announc (2013 Sep 19) 1:5
  • A unique dermal dendritic cell subset that skews the immune response toward Th2.
    Murakami R, Denda-Nagai K, Hashimoto S, Nagai S, Hattori M, Irimura T
    PLoS One (2013) 8:9
  • Complete genomic DNA sequence of the East Asian spotted fever disease agent Rickettsia japonica.
    Matsutani M, Ogawa M, Takaoka N, Hanaoka N, Toh H, Yamashita A, Oshima K, Hirakawa H, Kuhara S, Suzuki H, Hattori M, Kishimoto T, Ando S, Azuma Y, Shirai M
    PLoS One (2013) 8:9
  • Genomic features of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid.
    Shimizu-Kadota M, Kato H, Shiwa Y, Oshima K, Machii M, Araya-Kojima T, Zendo T, Hattori M, Sonomoto K, Yoshikawa H
    Biosci Biotechnol Biochem (2013) 77:9
    PubMed ID: 24018670 DOI: 10.1271/bbb.130080
  • Seasonal transition of active bacterial and archaeal communities in relation to water management in paddy soils.
    Itoh H, Ishii S, Shiratori Y, Oshima K, Otsuka S, Hattori M, Senoo K
    Microbes Environ (2013) 28:3
    PubMed ID: 24005888
  • Qualitative rather than quantitative changes are hallmarks of fibroblasts in bleomycin-induced pulmonary fibrosis.
    Tsukui T, Ueha S, Abe J, Hashimoto S, Shichino S, Shimaoka T, Shand FH, Arakawa Y, Oshima K, Hattori M, Inagaki Y, Tomura M, Matsushima K
    Am J Pathol (2013 Sep) 183:3
  • Defensive bacteriome symbiont with a drastically reduced genome.
    Nakabachi A, Ueoka R, Oshima K, Teta R, Mangoni A, Gurgui M, Oldham NJ, van Echten-Deckert G, Okamura K, Yamamoto K, Inoue H, Ohkuma M, Hongoh Y, Miyagishima SY, Hattori M, Piel J, Fukatsu T
    Curr Biol (2013 Aug 5) 23:15
  • Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota.
    Atarashi K, Tanoue T, Oshima K, Suda W, Nagano Y, Nishikawa H, Fukuda S, Saito T, Narushima S, Hase K, Kim S, Fritz JV, Wilmes P, Ueha S, Matsushima K, Ohno H, Olle B, Sakaguchi S, Taniguchi T, Morita H, Hattori M, Honda K
    Nature (2013 Aug 8) 500:7461
    PubMed ID: 23842501 DOI: 10.1038/nature12331
  • Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris.
    Shibata TF, Maeda T, Nikoh N, Yamaguchi K, Oshima K, Hattori M, Nishiyama T, Hasebe M, Fukatsu T, Kikuchi Y, Shigenobu S
    Genome Announc (2013 Jul 5) 1:4
  • Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome.
    Yoshimoto S, Loo TM, Atarashi K, Kanda H, Sato S, Oyadomari S, Iwakura Y, Oshima K, Morita H, Hattori M, Honda K, Ishikawa Y, Hara E, Ohtani N
    Nature (2013 Jul 4) 499:7456
    PubMed ID: 23803760 DOI: 10.1038/nature12347
  • Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna.
    Nakamura Y, Mori K, Saitoh K, Oshima K, Mekuchi M, Sugaya T, Shigenobu Y, Ojima N, Muta S, Fujiwara A, Yasuike M, Oohara I, Hirakawa H, Chowdhury VS, Kobayashi T, Nakajima K, Sano M, Wada T, Tashiro K, Ikeo K, Hattori M, Kuhara S, Gojobori T, Inouye K
    Proc Natl Acad Sci U S A (2013 Jul 2) 110:27
  • Robustness of gut microbiota of healthy adults in response to probiotic intervention revealed by high-throughput pyrosequencing.
    Kim SW, Suda W, Kim S, Oshima K, Fukuda S, Ohno H, Morita H, Hattori M
    DNA Res (2013 Jun) 20:3
  • Genomic analysis by deep sequencing of the probiotic Lactobacillus brevis KB290 harboring nine plasmids reveals genomic stability.
    Fukao M, Oshima K, Morita H, Toh H, Suda W, Kim SW, Suzuki S, Yakabe T, Hattori M, Yajima N
    PLoS One (2013) 8:3
  • Thermophile-fermented compost as a possible scavenging feed additive to prevent peroxidation.
    Miyamoto H, Shimada E, Satoh T, Tanaka R, Oshima K, Suda W, Fukuda S, Nishiuchi T, Matsuura M, Mori K, Miyamoto H, Ohno H, Hattori M, Kodama H, Matsushita T
    J Biosci Bioeng (2013 Aug) 116:2
  • Coordinated changes in DNA methylation in antigen-specific memory CD4 T cells.
    Hashimoto S, Ogoshi K, Sasaki A, Abe J, Qu W, Nakatani Y, Ahsan B, Oshima K, Shand FH, Ametani A, Suzuki Y, Kaneko S, Wada T, Hattori M, Sugano S, Morishita S, Matsushima K
    J Immunol (2013 Apr 15) 190:8
  • Chromosome painting in silico in a bacterial species reveals fine population structure.
    Yahara K, Furuta Y, Oshima K, Yoshida M, Azuma T, Hattori M, Uchiyama I, Kobayashi I
    Mol Biol Evol (2013 Jun) 30:6
  • Our second genome-human metagenome: how next-generation sequencer changes our life through microbiology.
    Song S, Jarvie T, Hattori M
    Adv Microb Physiol (2013) 62:
  • Plasma membrane-localized Al-transporter from blue hydrangea sepals is a member of the anion permease family.
    Negishi T, Oshima K, Hattori M, Yoshida K
    Genes Cells (2013 May) 18:5
    PubMed ID: 23433438 DOI: 10.1111/gtc.12041
  • Genome analysis suggests that the soil oligotrophic bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of Aeschynomene indica.
    Okubo T, Fukushima S, Itakura M, Oshima K, Longtonglang A, Teaumroong N, Mitsui H, Hattori M, Hattori R, Hattori T, Minamisawa K
    Appl Environ Microbiol (2013 Apr) 79:8
    PubMed ID: 23396330 DOI: 10.1128/AEM.00009-13
  • Comparative analysis of proteolytic enzymes need for processing of antihypertensive peptides between Lactobacillus helveticus CM4 and DPC4571.
    Wakai T, Shinoda T, Uchida N, Hattori M, Nakamura Y, Beresford T, Ross RP, Yamamoto N
    J Biosci Bioeng (2013 Mar) 115:3
  • Bacterial population dynamics in a laboratory activated sludge reactor monitored by pyrosequencing of 16S rRNA.
    Satoh H, Oshima K, Suda W, Ranasinghe P, Li N, Gunawardana EG, Hattori M, Mino T
    Microbes Environ (2013) 28:1
    PubMed ID: 23100021

2012

  • Tonoplast- and plasma membrane-localized aquaporin-family transporters in blue hydrangea sepals of aluminum hyperaccumulating plant.
    Negishi T, Oshima K, Hattori M, Kanai M, Mano S, Nishimura M, Yoshida K
    PLoS One (2012) 7:8
  • Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation.
    Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, Suzuki Y, Sato Y, Kawashima S, Katayama T, Wakaguri H, Inoue N, Homma K, Tada-Umezaki M, Yagi Y, Fujii Y, Habara T, Kanehisa M, Watanabe H, Ito K, Gojobori T, Sugawara H, Imanishi T, Weir W, Gardner M, Pain A, Shiels B, Hattori M, Nene V, Sugimoto C
    MBio (2012) 3:5
  • Revealing microbial community structures in large- and small-scale activated sludge systems by barcoded pyrosequencing of 16S rRNA gene.
    Ranasinghe PD, Satoh H, Oshiki M, Oshima K, Suda W, Hattori M, Mino T
    Water Sci Technol (2012) 66:10
    PubMed ID: 22949246 DOI: 10.2166/wst.2012.428
  • Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide.
    Takeno A, Okamoto A, Tori K, Oshima K, Hirakawa H, Toh H, Agata N, Yamada K, Ogasawara N, Hayashi T, Shimizu T, Kuhara S, Hattori M, Ohta M
    J Bacteriol (2012 Sep) 194:17
    PubMed ID: 22887669 DOI: 10.1128/JB.01015-12
  • Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters.
    Fukuda S, Toh H, Taylor TD, Ohno H, Hattori M
    Gut Microbes (2012 Sep-Oct) 3:5
    PubMed ID: 22825494 DOI: 10.4161/gmic.21214
  • Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan.
    Fujimura R, Sato Y, Nishizawa T, Oshima K, Kim SW, Hattori M, Kamijo T, Ohta H
    J Bacteriol (2012 Aug) 194:15
    PubMed ID: 22815442 DOI: 10.1128/JB.00696-12
  • Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver.
    Suzuki N, Uefuji H, Nishikawa T, Mukai Y, Yamashita A, Hattori M, Ogasawara N, Bamba T, Fukusaki E, Kobayashi A, Ogata Y, Sakurai N, Suzuki H, Shibata D, Nakazawa Y
    Planta (2012 Nov) 236:5
  • Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochrome cd1.
    Hira D, Toh H, Migita CT, Okubo H, Nishiyama T, Hattori M, Furukawa K, Fujii T
    FEBS Lett (2012 Jun 4) 586:11
  • Complete genome sequence of the serotype k Streptococcus mutans strain LJ23.
    Aikawa C, Furukawa N, Watanabe T, Minegishi K, Furukawa A, Eishi Y, Oshima K, Kurokawa K, Hattori M, Nakano K, Maruyama F, Nakagawa I, Ooshima T
    J Bacteriol (2012 May) 194:10
    PubMed ID: 22535936 DOI: 10.1128/JB.00350-12
  • Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species.
    Yahara K, Kawai M, Furuta Y, Takahashi N, Handa N, Tsuru T, Oshima K, Yoshida M, Azuma T, Hattori M, Uchiyama I, Kobayashi I
    Genome Biol Evol (2012) 4:5
    PubMed ID: 22534164 DOI: 10.1093/gbe/evs043
  • Complete genome sequence of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid.
    Kato H, Shiwa Y, Oshima K, Machii M, Araya-Kojima T, Zendo T, Shimizu-Kadota M, Hattori M, Sonomoto K, Yoshikawa H
    J Bacteriol (2012 Apr) 194:8
    PubMed ID: 22461545 DOI: 10.1128/JB.00074-12
  • Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs.
    Okubo T, Tsukui T, Maita H, Okamoto S, Oshima K, Fujisawa T, Saito A, Futamata H, Hattori R, Shimomura Y, Haruta S, Morimoto S, Wang Y, Sakai Y, Hattori M, Aizawa S, Nagashima KV, Masuda S, Hattori T, Yamashita A, Bao Z, Hayatsu M, Kajiya-Kanegae H, Yoshinaga I, Sakamoto K, Toyota K, Nakao M, Kohara M, Anda M, Niwa R, Jung-Hwan P, Sameshima-Saito R, Tokuda S, Yamamoto S, Yamamoto S, Yokoyama T, Akutsu T, Nakamura Y, Nakahira-Yanaka Y, Takada Hoshino Y, Hirakawa H, Mitsui H, Terasawa K, Itakura M, Sato S, Ikeda-Ohtsubo W, Sakakura N, Kaminuma E, Minamisawa K
    Microbes Environ (2012) 27:3
    PubMed ID: 22452844
  • Insight into the transmission biology and species-specific functional capabilities of tsetse (Diptera: glossinidae) obligate symbiont Wigglesworthia.
    Rio RV, Symula RE, Wang J, Lohs C, Wu YN, Snyder AK, Bjornson RD, Oshima K, Biehl BS, Perna NT, Hattori M, Aksoy S
    MBio (2012) 3:1
  • Complete genome sequence of the denitrifying and N2O-reducing bacterium Azoarcus sp. strain KH32C.
    Nishizawa T, Tago K, Oshima K, Hattori M, Ishii S, Otsuka S, Senoo K
    J Bacteriol (2012 Mar) 194:5
    PubMed ID: 22328754 DOI: 10.1128/JB.06618-11
  • A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem.
    Takami H, Noguchi H, Takaki Y, Uchiyama I, Toyoda A, Nishi S, Chee GJ, Arai W, Nunoura T, Itoh T, Hattori M, Takai K
    PLoS One (2012) 7:1
  • Analysis of early bacterial communities on volcanic deposits on the island of Miyake (Miyake-jima), Japan: a 6-year study at a fixed site.
    Fujimura R, Sato Y, Nishizawa T, Nanba K, Oshima K, Hattori M, Kamijo T, Ohta H
    Microbes Environ (2012) 27:1
    PubMed ID: 22075623

2011

  • Complete genome sequences of Arcobacter butzleri ED-1 and Arcobacter sp. strain L, both isolated from a microbial fuel cell.
    Toh H, Sharma VK, Oshima K, Kondo S, Hattori M, Ward FB, Free A, Taylor TD
    J Bacteriol (2011 Nov) 193:22
    PubMed ID: 22038970 DOI: 10.1128/JB.06084-11
  • Complete genome sequence of the denitrifying and N(2)O-reducing bacterium Pseudogulbenkiania sp. strain NH8B.
    Ishii S, Tago K, Nishizawa T, Oshima K, Hattori M, Senoo K
    J Bacteriol (2011 Nov) 193:22
    PubMed ID: 22038961 DOI: 10.1128/JB.06127-11
  • Complete genome sequences of rat and mouse segmented filamentous bacteria, a potent inducer of th17 cell differentiation.
    Prakash T, Oshima K, Morita H, Fukuda S, Imaoka A, Kumar N, Sharma VK, Kim SW, Takahashi M, Saitou N, Taylor TD, Ohno H, Umesaki Y, Hattori M
    Cell Host Microbe (2011 Sep 15) 10:3
  • Genomic and proteomic characterization of the large Myoviridae bacteriophage ϕTMA of the extreme thermophile Thermus thermophilus.
    Tamakoshi M, Murakami A, Sugisawa M, Tsuneizumi K, Takeda S, Saheki T, Izumi T, Akiba T, Mitsuoka K, Toh H, Yamashita A, Arisaka F, Hattori M, Oshima T, Yamagishi A
    Bacteriophage (2011 May) 1:3
  • Complete genomic sequence of the equol-producing bacterium Eggerthella sp. strain YY7918, isolated from adult human intestine.
    Yokoyama S, Oshima K, Nomura I, Hattori M, Suzuki T
    J Bacteriol (2011 Oct) 193:19
    PubMed ID: 21914883 DOI: 10.1128/JB.05626-11
  • Complete genomic sequence of the O-desmethylangolensin-producing bacterium Clostridium rRNA cluster XIVa strain SY8519, isolated from adult human intestine.
    Yokoyama S, Oshima K, Nomura I, Hattori M, Suzuki T
    J Bacteriol (2011 Oct) 193:19
    PubMed ID: 21914882 DOI: 10.1128/JB.05637-11
  • Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae.
    Morita H, Toh H, Oshima K, Yoshizaki M, Kawanishi M, Nakaya K, Suzuki T, Miyauchi E, Ishii Y, Tanabe S, Murakami M, Hattori M
    PLoS One (2011) 6:8
  • Genome-wide profiling of DNA methylation in human cancer cells.
    Ogoshi K, Hashimoto S, Nakatani Y, Qu W, Oshima K, Tokunaga K, Sugano S, Hattori M, Morishita S, Matsushima K
    Genomics (2011 Oct) 98:4
  • The lifestyle of the segmented filamentous bacterium: a non-culturable gut-associated immunostimulating microbe inferred by whole-genome sequencing.
    Kuwahara T, Ogura Y, Oshima K, Kurokawa K, Ooka T, Hirakawa H, Itoh T, Nakayama-Imaohji H, Ichimura M, Itoh K, Ishifune C, Maekawa Y, Yasutomo K, Hattori M, Hayashi T
    DNA Res (2011 Aug) 18:4
  • Reductive evolution of bacterial genome in insect gut environment.
    Nikoh N, Hosokawa T, Oshima K, Hattori M, Fukatsu T
    Genome Biol Evol (2011) 3:
    PubMed ID: 21737395 DOI: 10.1093/gbe/evr064
  • Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease.
    Watanabe T, Maruyama F, Nozawa T, Aoki A, Okano S, Shibata Y, Oshima K, Kurokawa K, Hattori M, Nakagawa I, Abiko Y
    J Bacteriol (2011 Aug) 193:16
    PubMed ID: 21705612 DOI: 10.1128/JB.05269-11
  • Draft genome sequencing and comparative analysis of Aspergillus sojae NBRC4239.
    Sato A, Oshima K, Noguchi H, Ogawa M, Takahashi T, Oguma T, Koyama Y, Itoh T, Hattori M, Hanya Y
    DNA Res (2011 Jun) 18:3
  • The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions.
    Ikeda S, Okubo T, Takeda N, Banba M, Sasaki K, Imaizumi-Anraku H, Fujihara S, Ohwaki Y, Ohshima K, Fukuta Y, Eda S, Mitsui H, Hattori M, Sato T, Shinano T, Minamisawa K
    Appl Environ Microbiol (2011 Jul) 77:13
    PubMed ID: 21551283 DOI: 10.1128/AEM.00315-11
  • Evolution in an oncogenic bacterial species with extreme genome plasticity: Helicobacter pylori East Asian genomes.
    Kawai M, Furuta Y, Yahara K, Tsuru T, Oshima K, Handa N, Takahashi N, Yoshida M, Azuma T, Hattori M, Uchiyama I, Kobayashi I
    BMC Microbiol (2011 May 16) 11:
  • Enterotypes of the human gut microbiome.
    Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Doré J, MetaHIT Consortium., Antolín M, Artiguenave F, Blottiere HM, Almeida M, Brechot C, Cara C, Chervaux C, Cultrone A, Delorme C, Denariaz G, Dervyn R, Foerstner KU, Friss C, van de Guchte M, Guedon E, Haimet F, Huber W, van Hylckama-Vlieg J, Jamet A, Juste C, Kaci G, Knol J, Lakhdari O, Layec S, Le Roux K, Maguin E, Mérieux A, Melo Minardi R, M'rini C, Muller J, Oozeer R, Parkhill J, Renault P, Rescigno M, Sanchez N, Sunagawa S, Torrejon A, Turner K, Vandemeulebrouck G, Varela E, Winogradsky Y, Zeller G, Weissenbach J, Ehrlich SD, Bork P
    Nature (2011 May 12) 473:7346
    PubMed ID: 21508958 DOI: 10.1038/nature09944
  • Bifidobacteria can protect from enteropathogenic infection through production of acetate.
    Fukuda S, Toh H, Hase K, Oshima K, Nakanishi Y, Yoshimura K, Tobe T, Clarke JM, Topping DL, Suzuki T, Taylor TD, Itoh K, Kikuchi J, Morita H, Hattori M, Ohno H
    Nature (2011 Jan 27) 469:7331
    PubMed ID: 21270894 DOI: 10.1038/nature09646
  • Birth and death of genes linked to chromosomal inversion.
    Furuta Y, Kawai M, Yahara K, Takahashi N, Handa N, Tsuru T, Oshima K, Yoshida M, Azuma T, Hattori M, Uchiyama I, Kobayashi I
    Proc Natl Acad Sci U S A (2011 Jan 25) 108:4
  • Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.
    Nunoura T, Takaki Y, Kakuta J, Nishi S, Sugahara J, Kazama H, Chee GJ, Hattori M, Kanai A, Atomi H, Takai K, Takami H
    Nucleic Acids Res (2011 Apr) 39:8
    PubMed ID: 21169198 DOI: 10.1093/nar/gkq1228
  • Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces.
    Morita H, Nakano A, Onoda H, Toh H, Oshima K, Takami H, Murakami M, Fukuda S, Takizawa T, Kuwahara T, Ohno H, Tanabe S, Hattori M
    Int J Syst Evol Microbiol (2011 Nov) 61:Pt 11

2010

  • Identification of a novel Staphylococcus pseudintermedius exfoliative toxin gene and its prevalence in isolates from canines with pyoderma and healthy dogs.
    Iyori K, Hisatsune J, Kawakami T, Shibata S, Murayama N, Ide K, Nagata M, Fukata T, Iwasaki T, Oshima K, Hattori M, Sugai M, Nishifuji K
    FEMS Microbiol Lett (2010 Nov) 312:2
  • Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids.
    Yano H, Miyakoshi M, Ohshima K, Tabata M, Nagata Y, Hattori M, Tsuda M
    J Bacteriol (2010 Sep) 192:17
    PubMed ID: 20581207 DOI: 10.1128/JB.00359-10
  • Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2.
    Toh H, Oshima K, Toyoda A, Ogura Y, Ooka T, Sasamoto H, Park SH, Iyoda S, Kurokawa K, Morita H, Itoh K, Taylor TD, Hayashi T, Hattori M
    J Bacteriol (2010 Feb) 192:4
    PubMed ID: 20008064 DOI: 10.1128/JB.01543-09
  • Lactobacillus equicursoris sp. nov., isolated from the faeces of a thoroughbred racehorse.
    Morita H, Shimazu M, Shiono H, Toh H, Nakajima F, Akita H, Takagi M, Takami H, Murakami M, Masaoka T, Tanabe S, Hattori M
    Int J Syst Evol Microbiol (2010 Jan) 60:Pt 1

2009

  • Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103.
    Morita H, Toh H, Oshima K, Murakami M, Taylor TD, Igimi S, Hattori M
    J Bacteriol (2009 Dec) 191:24
    PubMed ID: 19820099 DOI: 10.1128/JB.01287-09
  • Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli.
    Ogura Y, Ooka T, Iguchi A, Toh H, Asadulghani M, Oshima K, Kodama T, Abe H, Nakayama K, Kurokawa K, Tobe T, Hattori M, Hayashi T
    Proc Natl Acad Sci U S A (2009 Oct 20) 106:42
  • Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis.
    Ishii S, Yamamoto M, Kikuchi M, Oshima K, Hattori M, Otsuka S, Senoo K
    Appl Environ Microbiol (2009 Nov) 75:22
    PubMed ID: 19767468 DOI: 10.1128/AEM.01481-09
  • The identification and functional implications of human-specific "fixed" amino acid substitutions in the glutamate receptor family.
    Goto H, Watanabe K, Araragi N, Kageyama R, Tanaka K, Kuroki Y, Toyoda A, Hattori M, Sakaki Y, Fujiyama A, Fukumaki Y, Shibata H
    BMC Evol Biol (2009 Sep 8) 9:
  • Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content.
    Maruyama F, Kobata M, Kurokawa K, Nishida K, Sakurai A, Nakano K, Nomura R, Kawabata S, Ooshima T, Nakai K, Hattori M, Hamada S, Nakagawa I
    BMC Genomics (2009 Aug 5) 10:
  • Cd1d-dependent regulation of bacterial colonization in the intestine of mice.
    Nieuwenhuis EE, Matsumoto T, Lindenbergh D, Willemsen R, Kaser A, Simons-Oosterhuis Y, Brugman S, Yamaguchi K, Ishikawa H, Aiba Y, Koga Y, Samsom JN, Oshima K, Kikuchi M, Escher JC, Hattori M, Onderdonk AB, Blumberg RS
    J Clin Invest (2009 May) 119:5
    PubMed ID: 19349688 DOI: 10.1172/JCI36509
  • Genome sequence of the lager brewing yeast, an interspecies hybrid.
    Nakao Y, Kanamori T, Itoh T, Kodama Y, Rainieri S, Nakamura N, Shimonaga T, Hattori M, Ashikari T
    DNA Res (2009 Apr) 16:2
  • The human intestinal microbiome: a new frontier of human biology.
    Hattori M, Taylor TD
    DNA Res (2009 Feb) 16:1

2008

  • Sharpea azabuensis gen. nov., sp. nov., a Gram-positive, strictly anaerobic bacterium isolated from the faeces of thoroughbred horses.
    Morita H, Shiratori C, Murakami M, Takami H, Toh H, Kato Y, Nakajima F, Takagi M, Akita H, Masaoka T, Hattori M
    Int J Syst Evol Microbiol (2008 Dec) 58:Pt 12
  • Large-scale microfabricated channel plates for high-throughput, fully automated DNA sequencing.
    Kumagai H, Utsunomiya S, Nakamura S, Yamamoto R, Harada A, Kaji T, Hazama M, Ohashi T, Inami A, Ikegami T, Miyamoto K, Endo N, Yoshimi K, Toyoda A, Hattori M, Sakaki Y
    Electrophoresis (2008 Dec) 29:23
  • Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.
    Hongoh Y, Sharma VK, Prakash T, Noda S, Toh H, Taylor TD, Kudo T, Sakaki Y, Toyoda A, Hattori M, Ohkuma M
    Science (2008 Nov 14) 322:5904
  • Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult.
    Oshima K, Toh H, Ogura Y, Sasamoto H, Morita H, Park SH, Ooka T, Iyoda S, Taylor TD, Hayashi T, Itoh K, Hattori M
    DNA Res (2008 Dec) 15:6
  • Systematic identification and sequence analysis of the genomic islands of the enteropathogenic Escherichia coli strain B171-8 by the combined use of whole-genome PCR scanning and fosmid mapping.
    Ogura Y, Abe H, Katsura K, Kurokawa K, Asadulghani M, Iguchi A, Ooka T, Nakayama K, Yamashita A, Hattori M, Tobe T, Hayashi T
    J Bacteriol (2008 Nov) 190:21
    PubMed ID: 18757547 DOI: 10.1128/JB.00625-08
  • Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis.
    Naito M, Hirakawa H, Yamashita A, Ohara N, Shoji M, Yukitake H, Nakayama K, Toh H, Yoshimura F, Kuhara S, Hattori M, Hayashi T, Nakayama K
    DNA Res (2008 Aug) 15:4
  • The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution.
    Nakayama K, Yamashita A, Kurokawa K, Morimoto T, Ogawa M, Fukuhara M, Urakami H, Ohnishi M, Uchiyama I, Ogura Y, Ooka T, Oshima K, Tamura A, Hattori M, Hayashi T
    DNA Res (2008 Aug) 15:4
  • Characterization of the antimicrobial peptide attacin loci from Glossina morsitans.
    Wang J, Hu C, Wu Y, Stuart A, Amemiya C, Berriman M, Toyoda A, Hattori M, Aksoy S
    Insect Mol Biol (2008 Jun) 17:3
  • BAC library construction and BAC end sequencing of five Drosophila species: the comparative map with the D. melanogaster genome.
    Murakami K, Toyoda A, Hattori M, Kuroki Y, Fujiyama A, Kojima T, Matsuda M, Sakaki Y, Yamamoto MT
    Genes Genet Syst (2008 Jun) 83:3
    PubMed ID: 18670136
  • Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.
    Morita H, Toh H, Fukuda S, Horikawa H, Oshima K, Suzuki T, Murakami M, Hisamatsu S, Kato Y, Takizawa T, Fukuoka H, Yoshimura T, Itoh K, O'Sullivan DJ, McKay LL, Ohno H, Kikuchi J, Masaoka T, Hattori M
    DNA Res (2008 Jun 30) 15:3
  • Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350.
    Ohnishi Y, Ishikawa J, Hara H, Suzuki H, Ikenoya M, Ikeda H, Yamashita A, Hattori M, Horinouchi S
    J Bacteriol (2008 Jun) 190:11
    PubMed ID: 18375553 DOI: 10.1128/JB.00204-08
  • Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell.
    Hongoh Y, Sharma VK, Prakash T, Noda S, Taylor TD, Kudo T, Sakaki Y, Toyoda A, Hattori M, Ohkuma M
    Proc Natl Acad Sci U S A (2008 Apr 8) 105:14
  • Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen.
    Goto T, Yamashita A, Hirakawa H, Matsutani M, Todo K, Ohshima K, Toh H, Miyamoto K, Kuhara S, Hattori M, Shimizu T, Akimoto S
    DNA Res (2008 Feb 29) 15:1

2007

  • Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes.
    Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, Toyoda A, Takami H, Morita H, Sharma VK, Srivastava TP, Taylor TD, Noguchi H, Mori H, Ogura Y, Ehrlich DS, Itoh K, Takagi T, Sakaki Y, Hayashi T, Hattori M
    DNA Res (2007 Aug 31) 14:4
  • Complete nucleotide sequence of pLD-TEX-KL, a 66-kb plasmid of Legionella dumoffii TEX-KL strain.
    Qin T, Hirakawa H, Iida K, Oshima K, Hattori M, Tashiro K, Kuhara S, Yoshida S
    Plasmid (2007 Nov) 58:3

2006

  • A large-scale full-length cDNA analysis to explore the budding yeast transcriptome.
    Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T
    Proc Natl Acad Sci U S A (2006 Nov 21) 103:47
  • The 160-kilobase genome of the bacterial endosymbiont Carsonella.
    Nakabachi A, Yamashita A, Toh H, Ishikawa H, Dunbar HE, Moran NA, Hattori M
    Science (2006 Oct 13) 314:5797
  • Efficient and stable transformation of Lactuca sativa L. cv. Cisco (lettuce) plastids.
    Kanamoto H, Yamashita A, Asao H, Okumura S, Takase H, Hattori M, Yokota A, Tomizawa K
    Transgenic Res (2006 Apr) 15:2
  • Human chromosome 11 DNA sequence and analysis including novel gene identification.
    Taylor TD, Noguchi H, Totoki Y, Toyoda A, Kuroki Y, Dewar K, Lloyd C, Itoh T, Takeda T, Kim DW, She X, Barlow KF, Bloom T, Bruford E, Chang JL, Cuomo CA, Eichler E, FitzGerald MG, Jaffe DB, LaButti K, Nicol R, Park HS, Seaman C, Sougnez C, Yang X, Zimmer AR, Zody MC, Birren BW, Nusbaum C, Fujiyama A, Hattori M, Rogers J, Lander ES, Sakaki Y
    Nature (2006 Mar 23) 440:7083
    PubMed ID: 16554811 DOI: 10.1038/nature04632
  • A rapid and simple transcriptional sequencing method for GC-rich DNA regions.
    Izawa M, Kitamur N, Odake N, Maki F, Kanehira K, Nemoto H, Yamaguchi M, Yamashita A, Sasaki N, Hattori M, Kanayama S, Yoned Y
    Jpn J Vet Res (2006 Feb) 53:3-4
    PubMed ID: 16544936
  • Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway.
    Kuroki Y, Toyoda A, Noguchi H, Taylor TD, Itoh T, Kim DS, Kim DW, Choi SH, Kim IC, Choi HH, Kim YS, Satta Y, Saitou N, Yamada T, Morishita S, Hattori M, Sakaki Y, Park HS, Fujiyama A
    Nat Genet (2006 Feb) 38:2
    PubMed ID: 16388311 DOI: 10.1038/ng1729
  • Genome sequence of the cat pathogen, Chlamydophila felis.
    Azuma Y, Hirakawa H, Yamashita A, Cai Y, Rahman MA, Suzuki H, Mitaku S, Toh H, Goto S, Murakami T, Sugi K, Hayashi H, Fukushi H, Hattori M, Kuhara S, Shirai M
    DNA Res (2006 Feb 28) 13:1
  • Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host.
    Toh H, Weiss BL, Perkin SA, Yamashita A, Oshima K, Hattori M, Aksoy S
    Genome Res (2006 Feb) 16:2
    PubMed ID: 16365377 DOI: 10.1101/gr.4106106

2005

  • Identification of large ancient duplications associated with human gene deserts.
    Itoh T, Toyoda A, Taylor TD, Sakaki Y, Hattori M
    Nat Genet (2005 Oct) 37:10
    PubMed ID: 16186813 DOI: 10.1038/ng1648
  • DNA sequence and analysis of human chromosome 18.
    Nusbaum C, Zody MC, Borowsky ML, Kamal M, Kodira CD, Taylor TD, Whittaker CA, Chang JL, Cuomo CA, Dewar K, FitzGerald MG, Yang X, Abouelleil A, Allen NR, Anderson S, Bloom T, Bugalter B, Butler J, Cook A, DeCaprio D, Engels R, Garber M, Gnirke A, Hafez N, Hall JL, Norman CH, Itoh T, Jaffe DB, Kuroki Y, Lehoczky J, Lui A, Macdonald P, Mauceli E, Mikkelsen TS, Naylor JW, Nicol R, Nguyen C, Noguchi H, O'Leary SB, O'Neill K, Piqani B, Smith CL, Talamas JA, Topham K, Totoki Y, Toyoda A, Wain HM, Young SK, Zeng Q, Zimmer AR, Fujiyama A, Hattori M, Birren BW, Sakaki Y, Lander ES
    Nature (2005 Sep 22) 437:7058
    PubMed ID: 16177791 DOI: 10.1038/nature03983
  • Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection.
    Kuroda M, Yamashita A, Hirakawa H, Kumano M, Morikawa K, Higashide M, Maruyama A, Inose Y, Matoba K, Toh H, Kuhara S, Hattori M, Ohta T
    Proc Natl Acad Sci U S A (2005 Sep 13) 102:37
  • Production of inbred and hybrid transgenic mice carrying large (> 200 kb) foreign DNA fragments by intracytoplasmic sperm injection.
    Osada T, Toyoda A, Moisyadi S, Akutsu H, Hattori M, Sakaki Y, Yanagimachi R
    Mol Reprod Dev (2005 Nov) 72:3
    PubMed ID: 16047391 DOI: 10.1002/mrd.20319
  • A case for a Glossina genome project.
    Aksoy S, Berriman M, Hall N, Hattori M, Hide W, Lehane MJ
    Trends Parasitol (2005 Mar) 21:3
  • Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region.
    Yokomine T, Shirohzu H, Purbowasito W, Toyoda A, Iwama H, Ikeo K, Hori T, Mizuno S, Tsudzuki M, Matsuda Y, Hattori M, Sakaki Y, Sasaki H
    Genome Res (2005 Jan) 15:1
    PubMed ID: 15590938 DOI: 10.1101/gr.2609605

2004

  • A 210-kb segment of tandem repeats and retroelements located between imprinted subdomains of mouse distal chromosome 7.
    Shirohzu H, Yokomine T, Sato C, Kato R, Toyoda A, Purbowasito W, Suda C, Mukai T, Hattori M, Okumura K, Sakaki Y, Sasaki H
    DNA Res (2004 Oct 31) 11:5
    PubMed ID: 15747580
  • Finishing the euchromatic sequence of the human genome.
    International Human Genome Sequencing Consortium.
    Nature (2004 Oct 21) 431:7011
    PubMed ID: 15496913 DOI: 10.1038/nature03001
  • The complete genomic sequence of Nocardia farcinica IFM 10152.
    Ishikawa J, Yamashita A, Mikami Y, Hoshino Y, Kurita H, Hotta K, Shiba T, Hattori M
    Proc Natl Acad Sci U S A (2004 Oct 12) 101:41
  • Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation.
    Kuwahara T, Yamashita A, Hirakawa H, Nakayama H, Toh H, Okada N, Kuhara S, Hattori M, Hayashi T, Ohnishi Y
    Proc Natl Acad Sci U S A (2004 Oct 12) 101:41
  • Genome sequence of Symbiobacterium thermophilum, an uncultivable bacterium that depends on microbial commensalism.
    Ueda K, Yamashita A, Ishikawa J, Shimada M, Watsuji TO, Morimura K, Ikeda H, Hattori M, Beppu T
    Nucleic Acids Res (2004) 32:16
    PubMed ID: 15383646 DOI: 10.1093/nar/gkh830
  • DNA sequence and comparative analysis of chimpanzee chromosome 22.
    Watanabe H, Fujiyama A, Hattori M, Taylor TD, Toyoda A, Kuroki Y, Noguchi H, BenKahla A, Lehrach H, Sudbrak R, Kube M, Taenzer S, Galgoczy P, Platzer M, Scharfe M, Nordsiek G, Blöcker H, Hellmann I, Khaitovich P, Pääbo S, Reinhardt R, Zheng HJ, Zhang XL, Zhu GF, Wang BF, Fu G, Ren SX, Zhao GP, Chen Z, Lee YS, Cheong JE, Choi SH, Wu KM, Liu TT, Hsiao KJ, Tsai SF, Kim CG, OOta S, Kitano T, Kohara Y, Saitou N, Park HS, Wang SY, Yaspo ML, Sakaki Y
    Nature (2004 May 27) 429:6990
    PubMed ID: 15164055 DOI: 10.1038/nature02564
  • Nucleotide substitutions in Staphylococcus aureus strains, Mu50, Mu3, and N315.
    Ohta T, Hirakawa H, Morikawa K, Maruyama A, Inose Y, Yamashita A, Oshima K, Kuroda M, Hattori M, Hiramatsu K, Kuhara S, Hayashi H
    DNA Res (2004 Feb 29) 11:1
    PubMed ID: 15141945

2003

  • Genome sequence of an M3 strain of Streptococcus pyogenes reveals a large-scale genomic rearrangement in invasive strains and new insights into phage evolution.
    Nakagawa I, Kurokawa K, Yamashita A, Nakata M, Tomiyasu Y, Okahashi N, Kawabata S, Yamazaki K, Shiba T, Yasunaga T, Hayashi H, Hattori M, Hamada S
    Genome Res (2003 Jun) 13:6A
    PubMed ID: 12799345 DOI: 10.1101/gr.1096703
  • Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.
    Ikeda H, Ishikawa J, Hanamoto A, Shinose M, Kikuchi H, Shiba T, Sakaki Y, Hattori M, Omura S
    Nat Biotechnol (2003 May) 21:5
    PubMed ID: 12692562 DOI: 10.1038/nbt820
  • In silico inference of inclusion membrane protein family in obligate intracellular parasites chlamydiae.
    Toh H, Miura K, Shirai M, Hattori M
    DNA Res (2003 Feb 28) 10:1
    PubMed ID: 12693550
  • Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.
    Makino K, Oshima K, Kurokawa K, Yokoyama K, Uda T, Tagomori K, Iijima Y, Najima M, Nakano M, Yamashita A, Kubota Y, Kimura S, Yasunaga T, Honda T, Shinagawa H, Hattori M, Iida T
    Lancet (2003 Mar 1) 361:9359
  • Breakpoints at 1p36.3 in three MDS/AML(M4) patients with t(1;3)(p36;q21) occur in the first intron and in the 5' region of MEL1.
    Xinh PT, Tri NK, Nagao H, Nakazato H, Taketazu F, Fujisawa S, Yagasaki F, Chen YZ, Hayashi Y, Toyoda A, Hattori M, Sakaki Y, Tokunaga K, Sato Y
    Genes Chromosomes Cancer (2003 Mar) 36:3
    PubMed ID: 12557231 DOI: 10.1002/gcc.10176

2002

  • Nucleotide sequence database policies.
    Brunak S, Danchin A, Hattori M, Nakamura H, Shinozaki K, Matise T, Preuss D
    Science (2002 Nov 15) 298:5597
    PubMed ID: 12436968
  • Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia.
    Akman L, Yamashita A, Watanabe H, Oshima K, Shiba T, Hattori M, Aksoy S
    Nat Genet (2002 Nov) 32:3
    PubMed ID: 12219091 DOI: 10.1038/ng986
  • Identification of the breakpoints at 1p36.2 and 3p21.3 in an AML(M3) patient who had t(1;3)(p36.2;p21.3) at the third relapse.
    Tri NK, Xinh PT, Nagao H, Izumi T, Ozawa K, Toyoda A, Hattori M, Sakaki Y, Tokunaga K, Sato Y
    Genes Chromosomes Cancer (2002 Dec) 35:4
    PubMed ID: 12378531 DOI: 10.1002/gcc.10130
  • Familial 14-Mb deletion at 21q11.2-q21.3 and variable phenotypic expression.
    Wakui K, Toyoda A, Kubota T, Hidaka E, Ishikawa M, Katsuyama T, Sakaki Y, Hattori M, Fukushima Y
    J Hum Genet (2002) 47:10
  • Comparative genomic sequence analysis of the human chromosome 21 Down syndrome critical region.
    Toyoda A, Noguchi H, Taylor TD, Ito T, Pletcher MT, Sakaki Y, Reeves RH, Hattori M
    Genome Res (2002 Sep) 12:9
    PubMed ID: 12213769 DOI: 10.1101/gr.153702
  • Identification of two novel primate-specific genes in DSCR.
    Takamatsu K, Maekawa K, Togashi T, Choi DK, Suzuki Y, Taylor TD, Toyoda A, Sugano S, Fujiyama A, Hattori M, Sakaki Y, Takeda T
    DNA Res (2002 Jun 30) 9:3
    PubMed ID: 12168953
  • Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.
    Shimizu T, Ohtani K, Hirakawa H, Ohshima K, Yamashita A, Shiba T, Ogasawara N, Hattori M, Kuhara S, Hayashi H
    Proc Natl Acad Sci U S A (2002 Jan 22) 99:2
  • Construction and analysis of a human-chimpanzee comparative clone map.
    Fujiyama A, Watanabe H, Toyoda A, Taylor TD, Itoh T, Tsai SF, Park HS, Yaspo ML, Lehrach H, Chen Z, Fu G, Saitou N, Osoegawa K, de Jong PJ, Suto Y, Hattori M, Sakaki Y
    Science (2002 Jan 4) 295:5552
  • Chromosome-wide assessment of replication timing for human chromosomes 11q and 21q: disease-related genes in timing-switch regions.
    Watanabe Y, Fujiyama A, Ichiba Y, Hattori M, Yada T, Sakaki Y, Ikemura T
    Hum Mol Genet (2002 Jan 1) 11:1
    PubMed ID: 11772995

2001

  • Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.
    Omura S, Ikeda H, Ishikawa J, Hanamoto A, Takahashi C, Shinose M, Takahashi Y, Horikawa H, Nakazawa H, Osonoe T, Kikuchi H, Shiba T, Sakaki Y, Hattori M
    Proc Natl Acad Sci U S A (2001 Oct 9) 98:21
  • The genomic structure and expression of MJD, the Machado-Joseph disease gene.
    Ichikawa Y, Goto J, Hattori M, Toyoda A, Ishii K, Jeong SY, Hashida H, Masuda N, Ogata K, Kasai F, Hirai M, Maciel P, Rouleau GA, Sakaki Y, Kanazawa I
    J Hum Genet (2001) 46:7
  • Molecular cloning and characterization of a gene expressed in mouse developing tongue, mDscr5 gene, a homolog of human DSCR5 (Down syndrome Critical Region gene 5).
    Choi DK, Suzuki Y, Yoshimura S, Togashi T, Hida M, Taylor TD, Wang Y, Sugano S, Hattori M, Sakaki Y
    Mamm Genome (2001 May) 12:5
  • Whole genome sequencing of meticillin-resistant Staphylococcus aureus.
    Kuroda M, Ohta T, Uchiyama I, Baba T, Yuzawa H, Kobayashi I, Cui L, Oguchi A, Aoki K, Nagai Y, Lian J, Ito T, Kanamori M, Matsumaru H, Maruyama A, Murakami H, Hosoyama A, Mizutani-Ui Y, Takahashi NK, Sawano T, Inoue R, Kaito C, Sekimizu K, Hirakawa H, Kuhara S, Goto S, Yabuzaki J, Kanehisa M, Yamashita A, Oshima K, Furuya K, Yoshino C, Shiba T, Hattori M, Ogasawara N, Hayashi H, Hiramatsu K
    Lancet (2001 Apr 21) 357:9264
    PubMed ID: 11418146
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y
    Proc Natl Acad Sci U S A (2001 Apr 10) 98:8
  • Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.
    Hayashi T, Makino K, Ohnishi M, Kurokawa K, Ishii K, Yokoyama K, Han CG, Ohtsubo E, Nakayama K, Murata T, Tanaka M, Tobe T, Iida T, Takami H, Honda T, Sasakawa C, Ogasawara N, Yasunaga T, Kuhara S, Shiba T, Hattori M, Shinagawa H
    DNA Res (2001 Feb 28) 8:1
    PubMed ID: 11258796
  • A physical map of the human genome.
    McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, Humphray SJ, French L, Evans RS, Bethel G, Whittaker A, Holden JL, McCann OT, Dunham A, Soderlund C, Scott CE, Bentley DR, Schuler G, Chen HC, Jang W, Green ED, Idol JR, Maduro VV, Montgomery KT, Lee E, Miller A, Emerling S, Kucherlapati, Gibbs R, Scherer S, Gorrell JH, Sodergren E, Clerc-Blankenburg K, Tabor P, Naylor S, Garcia D, de Jong PJ, Catanese JJ, Nowak N, Osoegawa K, Qin S, Rowen L, Madan A, Dors M, Hood L, Trask B, Friedman C, Massa H, Cheung VG, Kirsch IR, Reid T, Yonescu R, Weissenbach J, Bruls T, Heilig R, Branscomb E, Olsen A, Doggett N, Cheng JF, Hawkins T, Myers RM, Shang J, Ramirez L, Schmutz J, Velasquez O, Dixon K, Stone NE, Cox DR, Haussler D, Kent WJ, Furey T, Rogic S, Kennedy S, Jones S, Rosenthal A, Wen G, Schilhabel M, Gloeckner G, Nyakatura G, Siebert R, Schlegelberger B, Korenberg J, Chen XN, Fujiyama A, Hattori M, Toyoda A, Yada T, Park HS, Sakaki Y, Shimizu N, Asakawa S, Kawasaki K, Sasaki T, Shintani A, Shimizu A, Shibuya K, Kudoh J, Minoshima S, Ramser J, Seranski P, Hoff C, Poustka A, Reinhardt R, Lehrach H, International Human Genome Mapping Consortium.
    Nature (2001 Feb 15) 409:6822
    PubMed ID: 11237014 DOI: 10.1038/35057157
  • Initial sequencing and analysis of the human genome.
    Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann Y, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blöcker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowki J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ, Szustakowki J, International Human Genome Sequencing Consortium.
    Nature (2001 Feb 15) 409:6822
    PubMed ID: 11237011 DOI: 10.1038/35057062
  • A novel superoxide-producing NAD(P)H oxidase in kidney.
    Shiose A, Kuroda J, Tsuruya K, Hirai M, Hirakata H, Naito S, Hattori M, Sakaki Y, Sumimoto H
    J Biol Chem (2001 Jan 12) 276:2
  • Architecture and anatomy of the genomic locus encoding the human leukemia-associated transcription factor RUNX1/AML1.
    Levanon D, Glusman G, Bangsow T, Ben-Asher E, Male DA, Avidan N, Bangsow C, Hattori M, Taylor TD, Taudien S, Blechschmidt K, Shimizu N, Rosenthal A, Sakaki Y, Lancet D, Groner Y
    Gene (2001 Jan 10) 262:1-2
    PubMed ID: 11179664

2000

  • Identification of the homozygously deleted region at chromosome 1p36.2 in human neuroblastoma.
    Nakagawara A, Ohira M, Kageyama H, Mihara M, Furuta S, Machida T, Takayasu H, Islam A, Nakamura Y, Takahashi M, Shishikura T, Kaneko Y, Toyoda A, Hattori M, Sakaki Y, Ohki M, Horii A, Soeda E, Inazawa J, Seki N, Kuma H, Nozawa I, Sakiyama S
    Med Pediatr Oncol (2000 Dec) 35:6
    PubMed ID: 11107106
  • Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak.
    Yokoyama K, Makino K, Kubota Y, Watanabe M, Kimura S, Yutsudo CH, Kurokawa K, Ishii K, Hattori M, Tatsuno I, Abe H, Yoh M, Iida T, Ohnishi M, Hayashi T, Yasunaga T, Honda T, Sasakawa C, Shinagawa H
    Gene (2000 Nov 27) 258:1-2
    PubMed ID: 11111050
  • Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655.
    Ohnishi M, Murata T, Nakayama K, Kuhara S, Hattori M, Kurokawa K, Yasunaga T, Yokoyama K, Makino K, Shinagawa H, Hayashi T
    Syst Appl Microbiol (2000 Oct) 23:3
  • Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS.
    Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H
    Nature (2000 Sep 7) 407:6800
    PubMed ID: 10993077 DOI: 10.1038/35024074
  • Identification and characterization of a 500-kb homozygously deleted region at 1p36.2-p36.3 in a neuroblastoma cell line.
    Ohira M, Kageyama H, Mihara M, Furuta S, Machida T, Shishikura T, Takayasu H, Islam A, Nakamura Y, Takahashi M, Tomioka N, Sakiyama S, Kaneko Y, Toyoda A, Hattori M, Sakaki Y, Ohki M, Horii A, Soeda E, Inazawa J, Seki N, Kuma H, Nozawa I, Nakagawara A
    Oncogene (2000 Aug 31) 19:37
  • Sequence-based structural features between Kvlqt1 and Tapa1 on mouse chromosome 7F4/F5 corresponding to the Beckwith-Wiedemann syndrome region on human 11p15.5: long-stretches of unusually well conserved intronic sequences of kvlqt1 between mouse and human.
    Yatsuki H, Watanabe H, Hattori M, Joh K, Soejima H, Komoda H, Xin Z, Zhu X, Higashimoto K, Nishimura M, Kuratomi S, Sasaki H, Sakaki Y, Mukai T
    DNA Res (2000 Jun 30) 7:3
    PubMed ID: 10907850
  • A novel gene, DSCR5, from the distal Down syndrome critical region on chromosome 21q22.2.
    Togashi T, Choi DK, Taylor TD, Suzuki Y, Sugano S, Hattori M, Sakaki Y
    DNA Res (2000 Jun 30) 7:3
    PubMed ID: 10907851
  • Newly identified repeat sequences, derived from human chromosome 21qter, are also localized in the subtelomeric region of particular chromosomes and 2q13, and are conserved in the chimpanzee genome.
    Park HS, Nogami M, Okumura K, Hattori M, Sakaki Y, Fujiyama A
    FEBS Lett (2000 Jun 23) 475:3
    PubMed ID: 10869549
  • Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA.
    Shirai M, Hirakawa H, Kimoto M, Tabuchi M, Kishi F, Ouchi K, Shiba T, Ishii K, Hattori M, Kuhara S, Nakazawa T
    Nucleic Acids Res (2000 Jun 15) 28:12
    PubMed ID: 10871362
  • Comparison of outer membrane protein genes omp and pmp in the whole genome sequences of Chlamydia pneumoniae isolates from Japan and the United States.
    Shirai M, Hirakawa H, Ouchi K, Tabuchi M, Kishi F, Kimoto M, Takeuchi H, Nishida J, Shibata K, Fujinaga R, Yoneda H, Matsushima H, Tanaka C, Furukawa S, Miura K, Nakazawa A, Ishii K, Shiba T, Hattori M, Kuhara S, Nakazawa T
    J Infect Dis (2000 Jun) 181 Suppl 3:
    PubMed ID: 10839753 DOI: 10.1086/315616
  • The DNA sequence of human chromosome 21.
    Hattori M, Fujiyama A, Taylor TD, Watanabe H, Yada T, Park HS, Toyoda A, Ishii K, Totoki Y, Choi DK, Groner Y, Soeda E, Ohki M, Takagi T, Sakaki Y, Taudien S, Blechschmidt K, Polley A, Menzel U, Delabar J, Kumpf K, Lehmann R, Patterson D, Reichwald K, Rump A, Schillhabel M, Schudy A, Zimmermann W, Rosenthal A, Kudoh J, Schibuya K, Kawasaki K, Asakawa S, Shintani A, Sasaki T, Nagamine K, Mitsuyama S, Antonarakis SE, Minoshima S, Shimizu N, Nordsiek G, Hornischer K, Brant P, Scharfe M, Schon O, Desario A, Reichelt J, Kauer G, Blocker H, Ramser J, Beck A, Klages S, Hennig S, Riesselmann L, Dagand E, Haaf T, Wehrmeyer S, Borzym K, Gardiner K, Nizetic D, Francis F, Lehrach H, Reinhardt R, Yaspo ML, Chromosome 21 mapping and sequencing consortium.
    Nature (2000 May 18) 405:6784
    PubMed ID: 10830953 DOI: 10.1038/35012518
  • The human and mouse Period1 genes: five well-conserved E-boxes additively contribute to the enhancement of mPer1 transcription.
    Hida A, Koike N, Hirose M, Hattori M, Sakaki Y, Tei H
    Genomics (2000 May 1) 65:3
  • Criteria for gene identification and features of genome organization: analysis of 6.5 Mb of DNA sequence from human chromosome 21.
    Slavov D, Hattori M, Sakaki Y, Rosenthal A, Shimizu N, Minoshima S, Kudoh J, Yaspo ML, Ramser J, Reinhardt R, Reimer C, Clancy K, Rynditch A, Gardiner K
    Gene (2000 Apr 18) 247:1-2
    PubMed ID: 10773462
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  • 大島健志朗須田亙服部正平:微生物ゲノム研究の動向 難培養微生物研究の最新技術Ⅲ 1-8(シームシー出版 2016)
  • 須田亙高安伶奈小鳥遊景泰: メタゲノム解析・16S 解析とその解析技術 ヒトマイクバイオーム研究最前線 343-351(エヌ・テイー・エス出版 2016)
  • 西嶋傑, 服部正平:日本人腸内細菌叢のメタゲノム解析 ヒトマイクロバイオーム研究最前線 17-26(エヌ・テイー・エス出版 2016)
  • 大島健志朗西嶋傑須田亙:日本人腸内細菌叢のメタゲノム解析 ヒトマイクロバイオーム研究最前線 7-15(エヌ・テイー・エス出版 2016)
  • 服部正平:マイクロバイオーム 概念と解析・検索方法 臨床と微生物 42(6) 667-672(近代出版 2015)
  • 服部正平:ヒトマイクロバイオームのシークエンス解析 Surgery Frontier 22(3), 242-245 (メディカルレビュー社 2015)
  • 須田亙, 小鳥遊景泰, 服部正平:ヒトマイクロバイオームの解析手法とその基本構造 細胞 47 (2),61-64(ニューサイエンス社 2015)
  • 服部正平:総論 マイクロバイオーム研究の最前線 細胞 47 (2),50-52(ニューサイエンス社 2015)
  • 須田亙, 大島健志朗, 服部正平:細菌種や組成を調べるメタ16Sとメタゲノム解析 実験医学別冊 次世代シークエンス解析スタンダード 41, 258-268 (羊土社 2014)
  • 服部正平:腸内細菌叢のMetagenomics Bio Clinica 29(8),728-733(北隆館 2014)
  • 服部正平:メタゲノム解析による腸内フローラ全体像の解明 生物の科学 遺伝 68(4),322-327(エヌ・ティー・エス 2014)
  • 服部正平:ヒトマイクロバイオームとは? Medical Technology 42(6),527-528(医歯薬出版 2014)
  • 服部正平:疾患の腸内マイクロバイオーム解析 分子消化器病 11(2),161-168(先端医学社 2014)
  • 服部正平:ヒト常在菌叢のメタゲノム解析 医学のあゆみ 249(5),385(医歯薬出版2014)
  • 須田亙服部正平:次世代シークエンサーを用いた腸内フローラDNA解析 臨床と微生物 41(2) 107-112(近代出版 2014)
  • 服部正平西嶋傑:ヒト腸内細菌マイクロバイオームの特徴. G. I. Resaerch 22(2), 128-135(先端医学社 2014)
  • 服部正平:編集 大野博司・服部正平 実験医学増刊「常在細菌叢が操るヒトの健康と疾患」 第1章 1. 常在細菌叢をいかに読み解くのか. ヒトマイクロバイオームの大規模シークエンス解析. 32(5) 42(680)-48(686)(羊土社 2014)
  • 服部正平:ヒト腸内細菌叢メタゲノムの大規模シークエンス解析 化学と工業 67(2): 132-135(日本化学会 2014)
  • 須田亙大島健志朗、森田英利:次世代シークエンサーを用いた常在細菌叢解析 細胞工学 32:1115-1119(秀潤社 2013)
  • 須田亙:454GSシリーズを用いた16Sアンプリコンシークエンシングによる細菌叢構造解析 日本微生物生態学会誌 29:63-69 (日本微生物生態学 2013)
  • 服部正平:ヒト腸内細菌研究の進歩 炎症と免疫 21(6), 472-479(先端医学社 2013)
  • 高安伶奈, 高安美佐子: 腸内細菌叢生態の数理モデル構築 細胞工学 32(11), 1143-1147 (秀潤社 2013)
  • 西嶋傑服部正平:監修 特集「体内の細菌が作るもう一つの世界マイクロバイオームの驚異」 ヒトの腸内マイクロバイオーム. 細胞工学 32(11), 1129-1132(秀潤社 2013)
  • 服部正平:監修 特集「体内の細菌が作るもう一つの世界マイクロバイオームの驚異」 基礎の基礎. 細胞工学 32(11), 1110-1114(秀潤社 2013)
  • 服部正平:企画「マイクロバイオームと疾患」 健康と疾患のマイクロバイオーム比較解析 医学のあゆみ 246(13),1077-1082(医歯薬出版株式会社 2013)
  • 服部正平:企画「マイクロバイオームと疾患」 はじめに 医学のあゆみ 246(13),1075(医歯薬出版株式会社 2013)
  • 服部正平:ヒトマイクロバイオームのメタゲノム科学, Journal of Germfree life and gnotobiology(日本無菌生物ノートバイオロジー学会), 43(1):41 (2013)
  • 服部正平:ゲノム医学・生命科学研究 総集編 実験医学増刊 31(15), 第4章 腸内細菌を含むマイクロバイオーム 4-4 「ヒトマイクロバイオームの全体構造と機能」203-208(羊土社 2013)
  • 服部正平:ゲノム医学・生命科学研究 総集編 実験医学増刊 31(15), 第4章 腸内細菌を含むマイクロバイオーム 概論 「第2のヒトゲノムとしてのヒトマクロバイオーム」181-186(羊土社 2013)
  • 服部正平:次世代シークエンスによる消化器系疾患病態解明への挑戦 G. I. Resaerch 21(3), 88-96(先端医学社 2013)
  • 服部正平金相完須田亙:次世代シークエンサーを用いたヒト常在菌叢の大量16S解析 臨床検査 57 (4), 406-414(医学書院 2013)
  • 須田亙大島健志朗:次世代シークエンサーを使用した環境中の細菌叢の16S解析およびメタゲノム解析 日本微生物生態学会誌 27:63-69,(日本微生物生態学 2012)
  • 服部正平:ヒト常在菌叢マイクロバイオーム研究 感染・共生・生体防御システム 実験医学増刊 30(20), 3248-3254(羊土社 2012)
  • 服部正平:ゲノム科学によるヒト腸内細菌叢研究のあらたなフロンティア 医学のあゆみ 243(2),137-142(医歯薬出版株式会社 2012)
  • 服部正平:腸内細菌叢のメタゲノム解析とは? Health & Beauty Review 8月号 26-27(講談社 2012)
  • 服部正平:個人差を生むマイクロバイオーム 日経サイエンス 2012年10月号 50-57 (2012)
  • 服部正平大島健志朗須田亙:細菌叢の16Sとメタゲノム解析 第6章メタゲノム解析編 次世代シークエンサー: 目的別アドバンストメソッド(細胞工学別冊)160-168(細胞工学 2012)
  • 服部正平:次世代シークエンスはすべての腸内細菌を明らかにできるか 分子消化器病 9(2), 130-137(先端医学社 2012)
  • 服部正平:ヒト腸内細菌叢のメタゲノミクス 食品・免疫アレルギー辞典 101-103(朝倉書店 2011)
  • 服部正平:ヒト腸内マイクロバイオーム Surgery Frontier 18 (4), 64-67 (メディカルレビュー社 2011)
  • 服部正平:次世代シークエンサーを用いた腸内細菌叢のゲノム研究 化学療法の領域, 27 (9), 25-33(医薬ジャーナル社 2011)
  • 服部正平:ヒト腸内細菌叢をゲノムレベルで探る 分子消化器病, 8(2), 116-121(先端医学社 2011)
  • 服部正平:7章 腸内細菌叢と腸内共生系 腸内共生系のバイオサイエンス 247-255(丸善出版 2011)
  • 福田真嗣、服部正平、大野博司:ビフィズス菌の産生する酢酸が病原性大腸菌感染を予防する-糖トランスポーターの重要性- 実験医学 29 (6), 923-926 (2011)
  • 服部正平:ヒト腸内マイクロバイオームのゲノム科学 細胞工学 30 (4), 399-403(細胞工学 2011)
  • 服部正平:第3章 微生物のゲノム科学 現代生物科学入門 2 ゲノム科学の展開, 59-95(岩波書店 2011)
  • 服部正平:ヒト腸内細菌叢のメタゲノム解析 臨床検査 55 (2), 135-141 (医学書院 2011)
  • 服部正平:腸内細菌叢メタゲノム研究と腸疾患 大腸癌FRONTIER, 3 (3), 55-59(メディカルレビュー社 2010)
  • 服部正平:メタゲノム解析による腸内細菌叢の遺伝子研究 遺伝子診断学(第2版), 68, 506-510 (日本臨牀社 2010)
  • 服部正平:フローラ解析-メタゲノム解析 医科プロバイオティクス学 79-93 (シナジー 2009)
  • 服部正平:ヒト腸内細菌叢のメタゲノム解析 IBD Research 3 (4), 308-314 (先端医学社 2009)
  • 服部正平:メタゲノミクスによる腸内細菌叢研究 MSD(メディカル・サイエンス・ダイジェスト) 35(8), 321-324 (ニューサイエンス社 2009)
  • 服部正平:メタゲノミクスとヒト腸内細菌叢の機能 実験医学増刊号「遺伝子医学の最前線と次世代シーケンサー」実験医学 27(12), 121-127 (羊土社 2009)
  • 服部正平:次世代シークエンサーの現状と展望 Cancer Frontier 11, 121-130 (医薬ジャーナル社 2009)
  • 服部正平、概論:超高速シークエンサーがもたらす生命科学研究の大展開 実験医学 27 (1), 2-7 (羊土社 2009)
  • 服部正平、腸内細菌叢のメタゲノム解析とヒト生物学への展開 感染・炎症・免疫 39 (1), 2-13 (医薬の門社 2009)
  • 服部正平、ヒト腸内細菌叢の大規模シークエンス解析 バイオサイエンスとインダストリー 67(5), 192-196(バイオインダストリー協会 2009)
  • 服部正平、疾患と腸内細菌叢のメタゲノム解析 日本臨牀 67 (6), 1214-1218(日本臨牀社 2009)
  • 黒川顕、服部正平、メタゲノムデータベース 実験医学増刊バイオデータベースとソフトウェア最前線 27(7), 1003-1008(羊土社 2008)
  • 服部正平、ヒトの腸内細菌叢の全体像〜メタゲノム解析から見えてきたこと〜 科学 78(1), 30-33(岩波書店 2008)
  • 黒川顕・服部正平、細菌叢のメタゲノム解析 細胞工学別冊 比較ゲノム学から読み解く生命システム 161-165(秀潤社 2007)
  • 豊田敦・服部正平、新型DNAシークエンサーのインパクト 臨床遺伝学’07—ゲノム研究の臨床へのインパクト 21(3), 187-197(最新医学社 2007)
  • 服部正平、第10章 腸内細菌叢のメタゲノム解析 乳酸菌の保健機能と応用 107-118(シーエムシー出版 2007)
  • 服部正平・林哲也・黒川顕・伊藤武彦・桑原知巳、ヒト腸内細菌叢のゲノムシークエンス 腸内細菌学雑誌 21(3), 187-197(2007)
  • 服部正平、論説空間「21世紀ゲノム研究」 東京大学新聞(2007年3月10日)
  • 豊田敦・服部正平、超高速ゲノム解読の動向 実験医学 増刊号 25, 274-279(羊土社 2007)
  • 服部正平、第二次大規模ゲノムシークエンスの予兆 実験医学 24, 3003-3010(羊土社 2006)
  • 服部正平・黒川顕・伊藤武彦、メタゲノム解析による生命システム研究の広がり〜ヒト腸内細菌叢を読む〜 科学 76, 827-833(岩波書店 2006)
  • 服部正平、多種生物種のゲノムプロジェクト〜比較ゲノム研究〜 分子細胞治療 5, 268-272(先端医学社 2006)
  • 林哲也・服部正平、ヒト常在菌を含む環境細菌叢のメタゲノム解析 細胞工学 25, 812-816(秀潤社 2006)
  • 服部正平・榊佳之、細菌叢メタゲノム解析の意義とヒトメタゲノム計画 臨床と微生物 33, 115-120 (近代出版 2006)
  • 渡邉日出海・服部正平、チンパンジーゲノム概要版配列の解読 蛋白質核酸酵素 51, 178-187 (共立出版 2006)
  • 伊藤武彦・服部正平、 ヒトゲノム遺伝子砂漠内での哺乳動物に共通な大規模ゲノム重複の発見 実験医学 24, 388-391 (羊土社 2006)
  • 服部正平、細菌のゲノム解析の到達点と展望 蛋白質核酸酵素 増刊号 50, 2231-2236 (共立出版 2005)
  • 服部正平、ゲノム解析法の展開 細菌はなぜ病気を起こすか 35-45 (クバプロ 2005)
  • 藤英博・服部正平、ゲノム解析総論 プロバイオティクスとバイオジェニクス 199-214 (エヌ・ティー・エス社 2005)
  • 服部正平、ヒトは何ゆえにヒトか : ヒトゲノムの全解読とゲノム研究の今後 日本哺乳動物卵子学会誌 22, 2, 1 (2005)
  • 服部正平、ヒトゲノム完成版の解析 蛋白質核酸酵素 50, 162-168 (共立出版 2005)
  • 豊田敦・服部正平、現場で役立つバイオ機器の使い方・選び方 Bionics 1, 76-81 (オーム社 2005)
  • 服部正平、解読されたヒトゲノムの全貌 臨床精神医学 33, 1287-1295(アークメディア 2004)
  • 山下敦士・服部正平 DNAシークエンシング 蛋白質核酸酵素 増刊号 49, 1484-1489 (共立出版 2004)
  • 服部正平、微生物ゲノムシークエンス決定法 微生物はなぜ病気を起こすか 33-45 (クバプロ 2004)
  • 服部正平、ヒトゲノムを読み解く - ゲノム構造 Molecular Medicine 増刊号 41, 14-21 (中山書店 2004)
  • 豊田敦・服部正平、クローン化・配列決定できない配列 Molecular Medicine 増刊号 41, 37-39 (中山書店 2004)
  • 服部正平、ヒトゲノム解析 ゲノミクス・プロテオミクスの新展開 409-422 (エヌ・ティー・エス社 2004)
  • 服部正平、ヒトゲノム解読完了とその意味 食生活 98, 74-79 (全衛連 2004)
  • 服部正平、ヒトゲノム完全解読の全貌 ゲノム医学 3, 9-18 (メディカルレビュー社 2003)
  • 服部正平、ヒトゲノム解読に重要な役割を果たした技術 学術月報 56, 14-20 (日本学術振興会 2003)
  • 服部正平、ヒトゲノム解読の現状と今後の課題 DNA多型 11, 1-6(2003)
  • 服部正平、ヒトゲノム完全解読がもたらす生命科学の新たな展開 実験医学 21, 1623-1628 (羊土社 2003)
  • 服部正平、ヒトゲノム配列の完全解読 科学 75, 393-399 (岩波書店 2003)
  • 服部正平、ヒトゲノム計画の系譜と今後の展望 Molecular Medicine 増刊号 39, 198-207 (中山書店 2002)
  • 渡邉日出海・藤山秋佐夫・服部正平・榊佳之、ヒト・チンパンジー比較ゲノム地図 蛋白質核酸酵素 47, 808-813 (共立出版 2002)
  • 服部正平、ヒトゲノム解析 現状と将来 日本農芸化学会誌 76, バイオサイエンスの新世紀 380-384 (2002)
  • 服部正平、ヒトゲノム20番染色体の完全解読 実験医学 20, 564 (羊土社 2002)
  • 服部正平、ヒトゲノムプロジェクトー全解読へのカウントダウン Medicina 39, 390-393 (医学書院 2002)
  • 伊藤武彦・服部正平、ヒトゲノム解読と配列アノテーション 実験医学 増刊号 19, ゲノム医科学と基礎からのバイオインフォマティクス 1377-1382 (羊土社 2001)
  • 服部正平、ゲノム医科学とbioinformatics 医学のあゆみ 198, 793-795 (医歯薬出版 2001)
  • 服部正平・藤山秋佐夫・榊佳之、ヒト21番染色体シークエンス地図 蛋白質核酸酵素 46, 2254-2261 (共立出版 2001)
  • 服部正平、ゲノム計画を前進させた解読作業の自動化 別冊化学「ヒトゲノム最前線」 22-30 (化学同人 2001)
  • 服部正平、ヒトゲノムプロジェクトの現状と未来 医学のあゆみ  195, 870-875 (医歯薬出版 2000)
  • 榊佳之・服部正平・藤山秋佐夫・豊田敦・渡邊日出海・矢田哲士・Todd Taylor・朴洪石・十時泰、ヒト21番染色体の全解読–その達成への歩みと意義 蛋白質核酸酵素 45, 2520-2527 (共立出版 2000)
  • 服部正平、国際協力下でのヒトゲノムシークエンシング 蛋白質核酸酵素 45, 1978-1985 (共立出版 2000)
  • 服部正平、ヒト21番染色体シークエンスとヒトゲノムプロジェクト 遺伝 54, 26-31 (裳華房 2000)
  • 服部正平、日本が中心となったヒト21番染色体シークエンスプロジェクト 遺伝 54, 9-11 (裳華房 2000)
  • 服部正平、ヒト21番染色体シークエンス完成はヒトゲノム計画のGold Standard 文科省ゲノムサイエンスニュース 5, 3-5 (2000)
  • 服部正平、ゲノム:ヒト21番染色体シークエンスとヒトゲノムプロジェクト 現代医療 32, 40-46 (現代医療社 2000)
  • 服部正平ヒトゲノム完全解読から「ヒト」理解へ (東洋書店 2005) Amazon
  • 小笠原直毅・高見英人・久原哲・服部正平ホールゲノムショットガン法によるゲノム解析とアノテーション (学会出版センター 2001) Amazon